CAZyme3D

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Entry ID

Information for CAZyme ID: QEK14602.1

Basic Information

GenBank IDQEK14602.1
FamilyGH57
Sequence Length833
UniProt IDA0A5C0SKP0(100,100)Download
Average pLDDT?86.49
CAZy50 ID24304
CAZy50 RepYes, QEK14602.1
Structure ClusterSC_GH57_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2598455
KingdomArchaea
PhylumEuryarchaeota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus aciditolerans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRAMAVILLG  VLLIAAVSPS  VSTGSLPSDY  GAEITSTGFR  LRSWTVRGTN  VIGAGDRGAL60
GKSLPLWDWL  LSEPWPGSLA  TGEYQLREDR  DAIVGTLQTG  SLLVEKRLQT  VDSNRALLNV120
TFTNTRDSTF  KSLVNWDSFD  LGYAIAWAGY  LGKPGGEQEI  WMENGQLHIE  EKNWVRLGAK180
VEAFGLVDFD  EDLIALVFPD  EKSVALWLES  GSWGVETRAE  FPPLVLEPGE  SKTYVFEVFV240
GHIEELKEVY  PEIYEKLEPF  LERNRFEITF  DSQAFPIVGE  ITNLTVRITP  KEPLDKTGRL300
SVSVACGEGT  FERTYPVDLS  KESKVTLQIT  PEKSCRIKAE  LELEGEIIAS  ASTTMRAFER360
GKPLKVVFVW  HHHQSPGVWP  NGTLHGPWAL  VHTYDDELEP  YYDGGAYYFH  AWILQKYPEI420
KMTYHLSPSL  LWQWNLTNTG  WCQSYPSYQC  FTRESPEAKK  VREAMRLYRY  LYEKGQIEIL480
SSYFAHPIGG  YIAERYGWLD  LLDYELSLGK  KTTEEVIGVD  ASGIWLSEMA  FSPKLVPLLE540
EHGFEYTVLD  DRCHLRGLYP  YSPYHLYAIE  NSSIKVLFRD  HTISDDFAFN  NNFRSEEEAK600
EKARKIVEEI  LSVKEVDPNA  EVVTIAADGE  NWIIFSPNPG  LTAKYFEYLL  QYLQEAQEKG660
LIETVTLRDA  VSELEPYRNA  TPLTTSWLCS  WDKWTKEKKS  VQEPMWERDE  EVYNLTQAYV720
EKCGKDETYE  KALYGLAQAL  DSDFYWAEFS  YPPHVYAWLN  WTENLVKDGL  KGCSSTNVTP780
TTTTTSAAIL  HDTTSAIETH  STSETGESTG  SSICGVGTLS  ALSLLVLLLR  KKE833

Predicted 3D structure by AlphaFold2 with pLDDT = 86.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRAMAVILLG  VLLIAAVSPS  VSTGSLPSDY  GAEITSTGFR  LRSWTVRGTN  VIGAGDRGAL60
GKSLPLWDWL  LSEPWPGSLA  TGEYQLREDR  DAIVGTLQTG  SLLVEKRLQT  VDSNRALLNV120
TFTNTRDSTF  KSLVNWDSFD  LGYAIAWAGY  LGKPGGEQEI  WMENGQLHIE  EKNWVRLGAK180
VEAFGLVDFD  EDLIALVFPD  EKSVALWLES  GSWGVETRAE  FPPLVLEPGE  SKTYVFEVFV240
GHIEELKEVY  PEIYEKLEPF  LERNRFEITF  DSQAFPIVGE  ITNLTVRITP  KEPLDKTGRL300
SVSVACGEGT  FERTYPVDLS  KESKVTLQIT  PEKSCRIKAE  LELEGEIIAS  ASTTMRAFER360
GKPLKVVFVW  HHHQSPGVWP  NGTLHGPWAL  VHTYDDELEP  YYDGGAYYFH  AWILQKYPEI420
KMTYHLSPSL  LWQWNLTNTG  WCQSYPSYQC  FTRESPEAKK  VREAMRLYRY  LYEKGQIEIL480
SSYFAHPIGG  YIAERYGWLD  LLDYELSLGK  KTTEEVIGVD  ASGIWLSEMA  FSPKLVPLLE540
EHGFEYTVLD  DRCHLRGLYP  YSPYHLYAIE  NSSIKVLFRD  HTISDDFAFN  NNFRSEEEAK600
EKARKIVEEI  LSVKEVDPNA  EVVTIAADGE  NWIIFSPNPG  LTAKYFEYLL  QYLQEAQEKG660
LIETVTLRDA  VSELEPYRNA  TPLTTSWLCS  WDKWTKEKKS  VQEPMWERDE  EVYNLTQAYV720
EKCGKDETYE  KALYGLAQAL  DSDFYWAEFS  YPPHVYAWLN  WTENLVKDGL  KGCSSTNVTP780
TTTTTSAAIL  HDTTSAIETH  STSETGESTG  SSICGVGTLS  ALSLLVLLLR  KKE833

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH57(367-706)

MRAMAVILLG  VLLIAAVSPS  VSTGSLPSDY  GAEITSTGFR  LRSWTVRGTN  VIGAGDRGAL60
GKSLPLWDWL  LSEPWPGSLA  TGEYQLREDR  DAIVGTLQTG  SLLVEKRLQT  VDSNRALLNV120
TFTNTRDSTF  KSLVNWDSFD  LGYAIAWAGY  LGKPGGEQEI  WMENGQLHIE  EKNWVRLGAK180
VEAFGLVDFD  EDLIALVFPD  EKSVALWLES  GSWGVETRAE  FPPLVLEPGE  SKTYVFEVFV240
GHIEELKEVY  PEIYEKLEPF  LERNRFEITF  DSQAFPIVGE  ITNLTVRITP  KEPLDKTGRL300
SVSVACGEGT  FERTYPVDLS  KESKVTLQIT  PEKSCRIKAE  LELEGEIIAS  ASTTMRAFER360
GKPLKVVFVW  HHHQSPGVWP  NGTLHGPWAL  VHTYDDELEP  YYDGGAYYFH  AWILQKYPEI420
KMTYHLSPSL  LWQWNLTNTG  WCQSYPSYQC  FTRESPEAKK  VREAMRLYRY  LYEKGQIEIL480
SSYFAHPIGG  YIAERYGWLD  LLDYELSLGK  KTTEEVIGVD  ASGIWLSEMA  FSPKLVPLLE540
EHGFEYTVLD  DRCHLRGLYP  YSPYHLYAIE  NSSIKVLFRD  HTISDDFAFN  NNFRSEEEAK600
EKARKIVEEI  LSVKEVDPNA  EVVTIAADGE  NWIIFSPNPG  LTAKYFEYLL  QYLQEAQEKG660
LIETVTLRDA  VSELEPYRNA  TPLTTSWLCS  WDKWTKEKKS  VQEPMWERDE  EVYNLTQAYV720
EKCGKDETYE  KALYGLAQAL  DSDFYWAEFS  YPPHVYAWLN  WTENLVKDGL  KGCSSTNVTP780
TTTTTSAAIL  HDTTSAIETH  STSETGESTG  SSICGVGTLS  ALSLLVLLLR  KKE833

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help