Information for CAZyme ID: QEI32072.1
Basic Information
| GenBank ID | QEI32072.1 |
| Family | GH3 |
| Sequence Length | 718 |
| UniProt ID | A0A2N5P7J7(100,100) |
| Average pLDDT? | 95.75 |
| CAZy50 ID | 36455 |
| CAZy50 Rep | Yes, QEI32072.1 |
| Structure Cluster | SC_GH3_clus123 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 411470 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Mediterraneibacter |
| Species | Mediterraneibacter gnavus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MYRSNMDKNQ IKNLVRQMTL KEKAGQVTQL PSRYFQIKGS QLTGTENKLG ITECEKWQAG | 60 |
| SILGKMDAES MRNIQAENMK RSRLKIPMMF MTDIIHGYQT IFPVPLAMSC SFNPELVEKS | 120 |
| AAVSAKEGSA AGYQVTFSPM VDVVRDPRWG RVMESFGEDK RLNADFGSAM VRGYQGEDLK | 180 |
| HPESMAACVK HFAAYGAVQG GRDYNTADVS EYSLRNQYLP PFKACIDAGT KLVMAAFQAL | 240 |
| NGVPATANRW LLNDILRSEM EFQGTVISDW GAVMELIRHG VAENDTDAGE EALRAGIQIE | 300 |
| MATTTIMKNI DEYVNLDPNI EILLDRAVES ILLLKKELGL FEDPYRGVNA LREKNQLRCA | 360 |
| KNRQAALEMA LESCVLLENH AVLPLQKDTS IVLAGPYAES QEILGPWSVD GVVEDAVSVA | 420 |
| QGLRNRGGCL KSIIPLPFEK ISKQEMEHIL EDSKKADVTI LALGEPELWS GEAGCRSEIT | 480 |
| LPESQCRLVK ELFENKIKTV VLLFNGRPLD LRSIVPYSDA IIEMWFPGTE GGNAAADLLF | 540 |
| GKVNPSGHLT MSFPYGSGQI PVYYNMGNTG RPKELLEQEP RYKSQYLNIP NEPLYQFGYG | 600 |
| LSYTNFVVVF DGEIQKLDDG AYSVPIKVTN TGNRAGKAVI QVYIHKMKSK VARPVKELAA | 660 |
| YQKVMIRAGE SVSINIPLEK KSWDYWIPNI GWTKDAGHYK IMVGTDSQYV EECDLIVE | 718 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.75 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MYRSNMDKNQ IKNLVRQMTL KEKAGQVTQL PSRYFQIKGS QLTGTENKLG ITECEKWQAG | 60 |
| SILGKMDAES MRNIQAENMK RSRLKIPMMF MTDIIHGYQT IFPVPLAMSC SFNPELVEKS | 120 |
| AAVSAKEGSA AGYQVTFSPM VDVVRDPRWG RVMESFGEDK RLNADFGSAM VRGYQGEDLK | 180 |
| HPESMAACVK HFAAYGAVQG GRDYNTADVS EYSLRNQYLP PFKACIDAGT KLVMAAFQAL | 240 |
| NGVPATANRW LLNDILRSEM EFQGTVISDW GAVMELIRHG VAENDTDAGE EALRAGIQIE | 300 |
| MATTTIMKNI DEYVNLDPNI EILLDRAVES ILLLKKELGL FEDPYRGVNA LREKNQLRCA | 360 |
| KNRQAALEMA LESCVLLENH AVLPLQKDTS IVLAGPYAES QEILGPWSVD GVVEDAVSVA | 420 |
| QGLRNRGGCL KSIIPLPFEK ISKQEMEHIL EDSKKADVTI LALGEPELWS GEAGCRSEIT | 480 |
| LPESQCRLVK ELFENKIKTV VLLFNGRPLD LRSIVPYSDA IIEMWFPGTE GGNAAADLLF | 540 |
| GKVNPSGHLT MSFPYGSGQI PVYYNMGNTG RPKELLEQEP RYKSQYLNIP NEPLYQFGYG | 600 |
| LSYTNFVVVF DGEIQKLDDG AYSVPIKVTN TGNRAGKAVI QVYIHKMKSK VARPVKELAA | 660 |
| YQKVMIRAGE SVSINIPLEK KSWDYWIPNI GWTKDAGHYK IMVGTDSQYV EECDLIVE | 718 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.