CAZyme3D

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Entry ID

Information for CAZyme ID: QEH32172.1

Basic Information

GenBank IDQEH32172.1
FamilyGH5_25
Sequence Length569
UniProt IDA0A5B9VVB3(100,100)Download
Average pLDDT?90.14
CAZy50 ID56737
CAZy50 RepYes, QEH32172.1
Structure ClusterSC_GH5_clus299
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID406548
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderIsosphaerales
FamilyIsosphaeraceae
GenusAquisphaera
SpeciesAquisphaera giovannonii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTYSLGWTRP  IRWAGLAAIL  ALPLAARGAG  PAKLAAGARF  DLRADAAVGT  IDGGRVVQGT60
GTIDRPNWLK  GREQAAAYSV  NFPISRLGWR  ELAVRFTPEG  TGNVSVTLMG  PWEQASPGVL120
YREEAFWDGL  NVDGATLEGG  GFEPPSAASA  WQSGGGSIIR  KAADAPALEG  SHLARTWHNA180
TLTANLAVRA  GTPVTVLVHA  RAVTPEGFRE  MKRIAGHDTP  AHRAALKFRR  GANLGNGLEV240
APSQDWGVKY  TAEDIRHIKA  EGFDHIRIPI  GWHHYTGPAP  SYTLRPEIFR  KVDFFVNEAA300
REKLNVLINI  HHFDDFTTDP  KGQAARFLAI  WEQVAAHYAK  APDGLAFELL  NEPKDAATTE360
VINPIFAKAV  RAIRKTNPHR  TIVYGPGKWN  GIEELPALML  PDDDRNLIAT  VHCYDPFRFT420
HQGASWTGNG  PDSKVVGIVF  PGPPRTPLEP  DSSLDLSRGF  RDWLHAYNTE  PAGSNPCGPE480
VMDLAVTRIK  EWSDYYGRPV  YLGEFGAYTR  ADPASRANYY  GLFRRRLEAA  NIGWALWDWH540
AGFNYWDPKA  NAPEPGMHDA  LFGGAKAGR569

Predicted 3D structure by AlphaFold2 with pLDDT = 90.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTYSLGWTRP  IRWAGLAAIL  ALPLAARGAG  PAKLAAGARF  DLRADAAVGT  IDGGRVVQGT60
GTIDRPNWLK  GREQAAAYSV  NFPISRLGWR  ELAVRFTPEG  TGNVSVTLMG  PWEQASPGVL120
YREEAFWDGL  NVDGATLEGG  GFEPPSAASA  WQSGGGSIIR  KAADAPALEG  SHLARTWHNA180
TLTANLAVRA  GTPVTVLVHA  RAVTPEGFRE  MKRIAGHDTP  AHRAALKFRR  GANLGNGLEV240
APSQDWGVKY  TAEDIRHIKA  EGFDHIRIPI  GWHHYTGPAP  SYTLRPEIFR  KVDFFVNEAA300
REKLNVLINI  HHFDDFTTDP  KGQAARFLAI  WEQVAAHYAK  APDGLAFELL  NEPKDAATTE360
VINPIFAKAV  RAIRKTNPHR  TIVYGPGKWN  GIEELPALML  PDDDRNLIAT  VHCYDPFRFT420
HQGASWTGNG  PDSKVVGIVF  PGPPRTPLEP  DSSLDLSRGF  RDWLHAYNTE  PAGSNPCGPE480
VMDLAVTRIK  EWSDYYGRPV  YLGEFGAYTR  ADPASRANYY  GLFRRRLEAA  NIGWALWDWH540
AGFNYWDPKA  NAPEPGMHDA  LFGGAKAGR569

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_25(245-539)

MTYSLGWTRP  IRWAGLAAIL  ALPLAARGAG  PAKLAAGARF  DLRADAAVGT  IDGGRVVQGT60
GTIDRPNWLK  GREQAAAYSV  NFPISRLGWR  ELAVRFTPEG  TGNVSVTLMG  PWEQASPGVL120
YREEAFWDGL  NVDGATLEGG  GFEPPSAASA  WQSGGGSIIR  KAADAPALEG  SHLARTWHNA180
TLTANLAVRA  GTPVTVLVHA  RAVTPEGFRE  MKRIAGHDTP  AHRAALKFRR  GANLGNGLEV240
APSQDWGVKY  TAEDIRHIKA  EGFDHIRIPI  GWHHYTGPAP  SYTLRPEIFR  KVDFFVNEAA300
REKLNVLINI  HHFDDFTTDP  KGQAARFLAI  WEQVAAHYAK  APDGLAFELL  NEPKDAATTE360
VINPIFAKAV  RAIRKTNPHR  TIVYGPGKWN  GIEELPALML  PDDDRNLIAT  VHCYDPFRFT420
HQGASWTGNG  PDSKVVGIVF  PGPPRTPLEP  DSSLDLSRGF  RDWLHAYNTE  PAGSNPCGPE480
VMDLAVTRIK  EWSDYYGRPV  YLGEFGAYTR  ADPASRANYY  GLFRRRLEAA  NIGWALWDWH540
AGFNYWDPKA  NAPEPGMHDA  LFGGAKAGR569

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help