CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QEH07052.1

Basic Information

GenBank IDQEH07052.1
FamilyGH17
Sequence Length650
UniProt IDA0A5B9TU79(100,100)Download
Average pLDDT?93.08
CAZy50 ID45171
CAZy50 RepYes, QEH07052.1
Structure ClusterSC_GH17_clus41
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID66821
KingdomBacteria
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilySulfurospirillaceae
GenusSulfurospirillum
SpeciesSulfurospirillum multivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNHTFKMILF  YLAMFATLGL  FWFWMALPSS  SLITLDPNVK  LQCLSYAPFG  KNESPMDIPK60
GFRPSTEQMD  KDLAHLATIT  SCIRSYSSVG  LEELPEIARK  HGLKLWLGAW  VSSDVALTKK120
EIDTTIRLAK  ENKDIVETVV  VGNEALLRRD  VSAAQLVGYI  NEVKQALPDM  VITYADVWEF180
WNKHPEVAPA  VDRVTIHILP  YWEDTPISVD  KALLHVKNIR  ELMQQKIPDK  EIVIGETGWP240
SEGRMRESAY  PSAVNQALFT  RGFVKMAEES  GWQYNFIEAF  DQPWKRMSEG  AVGGFWGLFD300
ADRADKHILH  GFVSNFPNAL  WLFISSCALS  LVGLIWLWGV  PTCSCKKAPY  WFATLFGGSV360
ALTWQANAYW  IVSRNNLEEA  WAILCLCVAF  LLWLKLVRFL  IAEEITMRGS  MARFMSVITL420
SEPKGETFWE  DVLHLCSISI  VLVMALSLAF  DGRYLNFELG  TLGIIAVVYA  VIYFSTERKE480
LNGLMEKASG  LILFLSALAV  LVQESARNDF  ALNWVILVMV  LGSTLWLSTS  KLCGLFRTLL540
ILVVAALAIV  AMKEGVYVKE  SWVAVCAAEP  MLPICQFRTL  LGKVIYLNYV  GLSGIVIAIF600
SVFSGSYILG  MIAIVMGLFC  LLTFNGFLGA  IIVVLGWWIV  GYRLSEKCTL  650

Predicted 3D structure by AlphaFold2 with pLDDT = 93.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNHTFKMILF  YLAMFATLGL  FWFWMALPSS  SLITLDPNVK  LQCLSYAPFG  KNESPMDIPK60
GFRPSTEQMD  KDLAHLATIT  SCIRSYSSVG  LEELPEIARK  HGLKLWLGAW  VSSDVALTKK120
EIDTTIRLAK  ENKDIVETVV  VGNEALLRRD  VSAAQLVGYI  NEVKQALPDM  VITYADVWEF180
WNKHPEVAPA  VDRVTIHILP  YWEDTPISVD  KALLHVKNIR  ELMQQKIPDK  EIVIGETGWP240
SEGRMRESAY  PSAVNQALFT  RGFVKMAEES  GWQYNFIEAF  DQPWKRMSEG  AVGGFWGLFD300
ADRADKHILH  GFVSNFPNAL  WLFISSCALS  LVGLIWLWGV  PTCSCKKAPY  WFATLFGGSV360
ALTWQANAYW  IVSRNNLEEA  WAILCLCVAF  LLWLKLVRFL  IAEEITMRGS  MARFMSVITL420
SEPKGETFWE  DVLHLCSISI  VLVMALSLAF  DGRYLNFELG  TLGIIAVVYA  VIYFSTERKE480
LNGLMEKASG  LILFLSALAV  LVQESARNDF  ALNWVILVMV  LGSTLWLSTS  KLCGLFRTLL540
ILVVAALAIV  AMKEGVYVKE  SWVAVCAAEP  MLPICQFRTL  LGKVIYLNYV  GLSGIVIAIF600
SVFSGSYILG  MIAIVMGLFC  LLTFNGFLGA  IIVVLGWWIV  GYRLSEKCTL  650

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(65-307)

MNHTFKMILF  YLAMFATLGL  FWFWMALPSS  SLITLDPNVK  LQCLSYAPFG  KNESPMDIPK60
GFRPSTEQMD  KDLAHLATIT  SCIRSYSSVG  LEELPEIARK  HGLKLWLGAW  VSSDVALTKK120
EIDTTIRLAK  ENKDIVETVV  VGNEALLRRD  VSAAQLVGYI  NEVKQALPDM  VITYADVWEF180
WNKHPEVAPA  VDRVTIHILP  YWEDTPISVD  KALLHVKNIR  ELMQQKIPDK  EIVIGETGWP240
SEGRMRESAY  PSAVNQALFT  RGFVKMAEES  GWQYNFIEAF  DQPWKRMSEG  AVGGFWGLFD300
ADRADKHILH  GFVSNFPNAL  WLFISSCALS  LVGLIWLWGV  PTCSCKKAPY  WFATLFGGSV360
ALTWQANAYW  IVSRNNLEEA  WAILCLCVAF  LLWLKLVRFL  IAEEITMRGS  MARFMSVITL420
SEPKGETFWE  DVLHLCSISI  VLVMALSLAF  DGRYLNFELG  TLGIIAVVYA  VIYFSTERKE480
LNGLMEKASG  LILFLSALAV  LVQESARNDF  ALNWVILVMV  LGSTLWLSTS  KLCGLFRTLL540
ILVVAALAIV  AMKEGVYVKE  SWVAVCAAEP  MLPICQFRTL  LGKVIYLNYV  GLSGIVIAIF600
SVFSGSYILG  MIAIVMGLFC  LLTFNGFLGA  IIVVLGWWIV  GYRLSEKCTL  650

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help