CAZyme3D

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Entry ID

Information for CAZyme ID: QEG25082.1

Basic Information

GenBank IDQEG25082.1
FamilyCBM9
Sequence Length433
UniProt IDA0A5B9PK31(100,100)Download
Average pLDDT?84.65
CAZy50 ID84612
CAZy50 RepYes, QEG25082.1
Structure ClusterSC_CBM9_clus1, SC_CBM9_clus17
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID980251
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusMariniblastus
SpeciesMariniblastus fucicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKHQLTTLVI  AIVAIMAAAP  CSDATFAQTP  EGFTSLFDGE  SLDGWEQKNG  TAAYEVVDGT60
IKGTTATGSP  NSFLCSKKEY  GDFELQFDVK  CDPDLNSGVQ  IRSVSKADYK  KGRVHGPQVE120
IAGPALVSGF  IYSEGTGRGW  ISQERTEHKH  YKNDGWNSYK  VVAQGKRVRT  WINGESVEDA180
EMPDVEPTKG  FLGLQVHGIP  KNKGPFSVQW  KNIYIKELAA  DDGEEESADQ  MGDDKANVKE240
GLRVGKASHG  TPVVDGKVDD  VWKNVPVLKV  NRDVKLENTL  DEGQKLPTAT  VRCLWDNGHL300
YCLAEVTDEK  VATASFDEWA  QDSVEFFVDE  NLSKTGPYDD  DDAQYRTNAA  GDETVGASTD360
AKSYTSKVSK  TDDGYIVEAC  INLKTEAGKK  IGFDVQVNND  PGTGFRGSIT  KWNDATNNTW420
ENLSGVGELE  LVK433

Predicted 3D structure by AlphaFold2 with pLDDT = 84.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKHQLTTLVI  AIVAIMAAAP  CSDATFAQTP  EGFTSLFDGE  SLDGWEQKNG  TAAYEVVDGT60
IKGTTATGSP  NSFLCSKKEY  GDFELQFDVK  CDPDLNSGVQ  IRSVSKADYK  KGRVHGPQVE120
IAGPALVSGF  IYSEGTGRGW  ISQERTEHKH  YKNDGWNSYK  VVAQGKRVRT  WINGESVEDA180
EMPDVEPTKG  FLGLQVHGIP  KNKGPFSVQW  KNIYIKELAA  DDGEEESADQ  MGDDKANVKE240
GLRVGKASHG  TPVVDGKVDD  VWKNVPVLKV  NRDVKLENTL  DEGQKLPTAT  VRCLWDNGHL300
YCLAEVTDEK  VATASFDEWA  QDSVEFFVDE  NLSKTGPYDD  DDAQYRTNAA  GDETVGASTD360
AKSYTSKVSK  TDDGYIVEAC  INLKTEAGKK  IGFDVQVNND  PGTGFRGSIT  KWNDATNNTW420
ENLSGVGELE  LVK433

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM66(42-197)+CBM9(254-431)

MKHQLTTLVI  AIVAIMAAAP  CSDATFAQTP  EGFTSLFDGE  SLDGWEQKNG  TAAYEVVDGT60
IKGTTATGSP  NSFLCSKKEY  GDFELQFDVK  CDPDLNSGVQ  IRSVSKADYK  KGRVHGPQVE120
IAGPALVSGF  IYSEGTGRGW  ISQERTEHKH  YKNDGWNSYK  VVAQGKRVRT  WINGESVEDA180
EMPDVEPTKG  FLGLQVHGIP  KNKGPFSVQW  KNIYIKELAA  DDGEEESADQ  MGDDKANVKE240
GLRVGKASHG  TPVVDGKVDD  VWKNVPVLKV  NRDVKLENTL  DEGQKLPTAT  VRCLWDNGHL300
YCLAEVTDEK  VATASFDEWA  QDSVEFFVDE  NLSKTGPYDD  DDAQYRTNAA  GDETVGASTD360
AKSYTSKVSK  TDDGYIVEAC  INLKTEAGKK  IGFDVQVNND  PGTGFRGSIT  KWNDATNNTW420
ENLSGVGELE  LVK433

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help