CAZyme3D

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Entry ID

Information for CAZyme ID: QEC73974.1

Basic Information

GenBank IDQEC73974.1
FamilyGH163
Sequence Length488
UniProt IDA0A5B8VQP4(100,100)Download
Average pLDDT?94.35
CAZy50 ID71464
CAZy50 RepYes, QEC73974.1
Structure ClusterSC_GH163_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID496057
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusArachidicoccus
SpeciesArachidicoccus ginsenosidivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQLRCVQKVD  REEGGHQGSL  IRFVNKVADA  FKDKKITTLA  YEGTAAAPQK  THAQSNVIIL60
ISSIDIFREQ  PLRNANWPAA  VLLRNQLKSW  ANKANQLFIW  DYSVQFTNYL  SPFPDLEVLA120
DNLKYFKSQH  VTGIFEQGSG  DTYADAAELN  SYLQAKLFWN  PDQDVHDLIT  EFCNGYYGSG180
SAFVREYLID  RKTALQNSGK  HLDIYGNPMI  DSRGYLSTEN  MEHYQKLLYE  AHLAVATDNK240
YSDRIKRLQL  SLEYVALQQA  LFYGIDSGGF  LQISKDLTTY  IPKAGWQDRV  DRFVMDCKQQ300
GVKVLAEEGL  SPDAYKDYWQ  KILSVPLPVN  LALHAKVTLD  NPFVEDYPAK  GNQTLTDGMP360
GYKDFSYNWL  CFYAADLSAI  IDMGSIKNCG  KISINFLDDP  RHWIFLPVSV  QVSVSQNGID420
YKDLKPVAFN  EGPEHSDIQI  ITASFSLPAA  SKLRFIKIKA  INPKTLTVWQ  NNTSKKAMIA480
ADEIRVTP488

Predicted 3D structure by AlphaFold2 with pLDDT = 94.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQLRCVQKVD  REEGGHQGSL  IRFVNKVADA  FKDKKITTLA  YEGTAAAPQK  THAQSNVIIL60
ISSIDIFREQ  PLRNANWPAA  VLLRNQLKSW  ANKANQLFIW  DYSVQFTNYL  SPFPDLEVLA120
DNLKYFKSQH  VTGIFEQGSG  DTYADAAELN  SYLQAKLFWN  PDQDVHDLIT  EFCNGYYGSG180
SAFVREYLID  RKTALQNSGK  HLDIYGNPMI  DSRGYLSTEN  MEHYQKLLYE  AHLAVATDNK240
YSDRIKRLQL  SLEYVALQQA  LFYGIDSGGF  LQISKDLTTY  IPKAGWQDRV  DRFVMDCKQQ300
GVKVLAEEGL  SPDAYKDYWQ  KILSVPLPVN  LALHAKVTLD  NPFVEDYPAK  GNQTLTDGMP360
GYKDFSYNWL  CFYAADLSAI  IDMGSIKNCG  KISINFLDDP  RHWIFLPVSV  QVSVSQNGID420
YKDLKPVAFN  EGPEHSDIQI  ITASFSLPAA  SKLRFIKIKA  INPKTLTVWQ  NNTSKKAMIA480
ADEIRVTP488

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(7-188)+CBM32(353-469)

MQLRCVQKVD  REEGGHQGSL  IRFVNKVADA  FKDKKITTLA  YEGTAAAPQK  THAQSNVIIL60
ISSIDIFREQ  PLRNANWPAA  VLLRNQLKSW  ANKANQLFIW  DYSVQFTNYL  SPFPDLEVLA120
DNLKYFKSQH  VTGIFEQGSG  DTYADAAELN  SYLQAKLFWN  PDQDVHDLIT  EFCNGYYGSG180
SAFVREYLID  RKTALQNSGK  HLDIYGNPMI  DSRGYLSTEN  MEHYQKLLYE  AHLAVATDNK240
YSDRIKRLQL  SLEYVALQQA  LFYGIDSGGF  LQISKDLTTY  IPKAGWQDRV  DRFVMDCKQQ300
GVKVLAEEGL  SPDAYKDYWQ  KILSVPLPVN  LALHAKVTLD  NPFVEDYPAK  GNQTLTDGMP360
GYKDFSYNWL  CFYAADLSAI  IDMGSIKNCG  KISINFLDDP  RHWIFLPVSV  QVSVSQNGID420
YKDLKPVAFN  EGPEHSDIQI  ITASFSLPAA  SKLRFIKIKA  INPKTLTVWQ  NNTSKKAMIA480
ADEIRVTP488

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help