Information for CAZyme ID: QEC72259.1
Basic Information
| GenBank ID | QEC72259.1 |
| Family | GH9 |
| Sequence Length | 683 |
| UniProt ID | A0A5B8VLR3(100,100) |
| Average pLDDT? | 87.49 |
| CAZy50 ID | 40723 |
| CAZy50 Rep | Yes, QEC72259.1 |
| Structure Cluster | SC_GH9_clus55 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 496057 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Arachidicoccus |
| Species | Arachidicoccus ginsenosidivorans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MARLFIFLQR MTCACFAGHR WQYEALKRAN GLNRKIVIMS VLGITCFLQV DGSPRVITLQ | 60 |
| GPPAKTIAVS EPPVFRLDQF GYISQGAKNV IFEWPASIWK EDIDGQRDSF FVYRVYPVLS | 120 |
| GSTGAGKSMA KVLTGAMPQP VMITQWFKDR RYYVLDVSSL QSPGKYQVVV KIGPKSFSSA | 180 |
| VFRVLDKAAF VHKGIGALLN YFSRQRANTA IEWAADAHLK LKGSTRRVDL RGGWCDASGD | 240 |
| VSKYFSHLAY TNFMSPQQIP LVTWSLVQAT EKLAPSLKQW YLLDSVQSES LWGADYLLRS | 300 |
| LSDSDFFYMT VFSYFKKDPA FREIVGLEAN SVTTTDYRCA FREGAGVAIA ALARISCWKL | 360 |
| NGHFTATNYL NGAKRAYQHL LSFNNRYDDD GVPNIIDDYC ALMAATELWK ATGDKFYRHE | 420 |
| ARHWAGRLCA RYMPDGYLRA DGPYQGVNTM TQTQTRVRIL NATPRPFWHA SDAGMPVVSL | 480 |
| IRYLDMEKES NYRNKAINII RDVLSHQLAI SNAVVNPFDY PRQQFLYKGK LETGFFIPHE | 540 |
| NESGWWWQGE NARLASLATA ALSGGVLLEP QGGQAEAQII QIAGLRGRLK SAALHHLSWI | 600 |
| TGCNPYGICF LYGFGYKNVP YMHSNYGHGS ETGGISNGIT GLNSDGTGIA FRTEDQGNEW | 660 |
| RWTEQWLPHA AWYLQALTAL GSH | 683 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.49 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MARLFIFLQR MTCACFAGHR WQYEALKRAN GLNRKIVIMS VLGITCFLQV DGSPRVITLQ | 60 |
| GPPAKTIAVS EPPVFRLDQF GYISQGAKNV IFEWPASIWK EDIDGQRDSF FVYRVYPVLS | 120 |
| GSTGAGKSMA KVLTGAMPQP VMITQWFKDR RYYVLDVSSL QSPGKYQVVV KIGPKSFSSA | 180 |
| VFRVLDKAAF VHKGIGALLN YFSRQRANTA IEWAADAHLK LKGSTRRVDL RGGWCDASGD | 240 |
| VSKYFSHLAY TNFMSPQQIP LVTWSLVQAT EKLAPSLKQW YLLDSVQSES LWGADYLLRS | 300 |
| LSDSDFFYMT VFSYFKKDPA FREIVGLEAN SVTTTDYRCA FREGAGVAIA ALARISCWKL | 360 |
| NGHFTATNYL NGAKRAYQHL LSFNNRYDDD GVPNIIDDYC ALMAATELWK ATGDKFYRHE | 420 |
| ARHWAGRLCA RYMPDGYLRA DGPYQGVNTM TQTQTRVRIL NATPRPFWHA SDAGMPVVSL | 480 |
| IRYLDMEKES NYRNKAINII RDVLSHQLAI SNAVVNPFDY PRQQFLYKGK LETGFFIPHE | 540 |
| NESGWWWQGE NARLASLATA ALSGGVLLEP QGGQAEAQII QIAGLRGRLK SAALHHLSWI | 600 |
| TGCNPYGICF LYGFGYKNVP YMHSNYGHGS ETGGISNGIT GLNSDGTGIA FRTEDQGNEW | 660 |
| RWTEQWLPHA AWYLQALTAL GSH | 683 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.