CAZyme3D

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Entry ID

Information for CAZyme ID: QEC54958.1

Basic Information

GenBank IDQEC54958.1
FamilyGH20
Sequence Length793
UniProt IDA0A5B8UEM8(100,100)Download
Average pLDDT?91.00
CAZy50 ID28046
CAZy50 RepYes, QEC54958.1
Structure ClusterSC_GH20_clus161
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID661481
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusFlavisolibacter
SpeciesFlavisolibacter ginsenosidimutans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNLICLLLL  VPCFALAQTK  TNLNVIPQPV  SIQMGNGQFT  LTKKTVIVAS  DAEGRKTANY60
LNDYLQQTYG  FRLDVDKRES  KNYIRLTTKK  FIKAPDKDAY  NLTVTPDGIA  ILGDTYEGTF120
YGVQTLIQLL  PATPNTQPQA  PNFSIPVVSI  QDYPRFAYRG  MHLDVGRHFF  PASFVKKYID180
YLALHKLNYF  HWHLTDDQGW  RIEIKKYPEL  MSEAAYRNGT  IIGRYPGTGN  DNIRYGGYYT240
QDEVKDIVKY  AADRHITVIP  EIEMPGHSSA  AIAAYPWLSC  FPDKRTIIPN  YPSQESSRPD300
VPAGAAHVKL  VQETWGVFED  IYCAGKDSTF  TFLQNVLDEV  ITLFPSTFIH  IGGDEAPKTH360
WKHCPLCQAR  IKAEGLKDEH  GLQSYFIQRM  EKYLNTKGKT  IIGWDEILEG  GLAPNAVVMS420
WRGEQGGIEA  AKQKHQVIMT  PGEYVYLDHS  QTKNEDSVTI  GGYTPIEKVY  AYEPVPKELS480
ADEAKYILGA  QANLWTEYIA  YLSKVEYMVF  PRMSALSEVL  WSPKEKRNWK  DFEQRLQTQF540
KRYDLWKANY  SKAYFDLQSS  ILPTPNNEGV  IWKLQSRSKT  DDILISKIVG  YGSTRSQGRY600
PLGKGENSRL  INSDGMYVAY  LKSQKLIKST  LQQSFFFNKA  TGKKVFITAT  PNEKYPGQGG660
AFSLVNGVYS  TKGLSYPDWI  GFIGDDLEAT  IDLGKTEKID  SVRMHTLNQN  GSWIYLPQYV720
EVFTSNNGKD  FTSVGKSSDF  IPDMLTMGWI  TVRVQKTSAR  YIKLLAKNYG  LIPDDKPGGG780
NKAWLFADEI  QVY793

Predicted 3D structure by AlphaFold2 with pLDDT = 91.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNLICLLLL  VPCFALAQTK  TNLNVIPQPV  SIQMGNGQFT  LTKKTVIVAS  DAEGRKTANY60
LNDYLQQTYG  FRLDVDKRES  KNYIRLTTKK  FIKAPDKDAY  NLTVTPDGIA  ILGDTYEGTF120
YGVQTLIQLL  PATPNTQPQA  PNFSIPVVSI  QDYPRFAYRG  MHLDVGRHFF  PASFVKKYID180
YLALHKLNYF  HWHLTDDQGW  RIEIKKYPEL  MSEAAYRNGT  IIGRYPGTGN  DNIRYGGYYT240
QDEVKDIVKY  AADRHITVIP  EIEMPGHSSA  AIAAYPWLSC  FPDKRTIIPN  YPSQESSRPD300
VPAGAAHVKL  VQETWGVFED  IYCAGKDSTF  TFLQNVLDEV  ITLFPSTFIH  IGGDEAPKTH360
WKHCPLCQAR  IKAEGLKDEH  GLQSYFIQRM  EKYLNTKGKT  IIGWDEILEG  GLAPNAVVMS420
WRGEQGGIEA  AKQKHQVIMT  PGEYVYLDHS  QTKNEDSVTI  GGYTPIEKVY  AYEPVPKELS480
ADEAKYILGA  QANLWTEYIA  YLSKVEYMVF  PRMSALSEVL  WSPKEKRNWK  DFEQRLQTQF540
KRYDLWKANY  SKAYFDLQSS  ILPTPNNEGV  IWKLQSRSKT  DDILISKIVG  YGSTRSQGRY600
PLGKGENSRL  INSDGMYVAY  LKSQKLIKST  LQQSFFFNKA  TGKKVFITAT  PNEKYPGQGG660
AFSLVNGVYS  TKGLSYPDWI  GFIGDDLEAT  IDLGKTEKID  SVRMHTLNQN  GSWIYLPQYV720
EVFTSNNGKD  FTSVGKSSDF  IPDMLTMGWI  TVRVQKTSAR  YIKLLAKNYG  LIPDDKPGGG780
NKAWLFADEI  QVY793

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH20(152-523)+CBM32(652-767)

MKNLICLLLL  VPCFALAQTK  TNLNVIPQPV  SIQMGNGQFT  LTKKTVIVAS  DAEGRKTANY60
LNDYLQQTYG  FRLDVDKRES  KNYIRLTTKK  FIKAPDKDAY  NLTVTPDGIA  ILGDTYEGTF120
YGVQTLIQLL  PATPNTQPQA  PNFSIPVVSI  QDYPRFAYRG  MHLDVGRHFF  PASFVKKYID180
YLALHKLNYF  HWHLTDDQGW  RIEIKKYPEL  MSEAAYRNGT  IIGRYPGTGN  DNIRYGGYYT240
QDEVKDIVKY  AADRHITVIP  EIEMPGHSSA  AIAAYPWLSC  FPDKRTIIPN  YPSQESSRPD300
VPAGAAHVKL  VQETWGVFED  IYCAGKDSTF  TFLQNVLDEV  ITLFPSTFIH  IGGDEAPKTH360
WKHCPLCQAR  IKAEGLKDEH  GLQSYFIQRM  EKYLNTKGKT  IIGWDEILEG  GLAPNAVVMS420
WRGEQGGIEA  AKQKHQVIMT  PGEYVYLDHS  QTKNEDSVTI  GGYTPIEKVY  AYEPVPKELS480
ADEAKYILGA  QANLWTEYIA  YLSKVEYMVF  PRMSALSEVL  WSPKEKRNWK  DFEQRLQTQF540
KRYDLWKANY  SKAYFDLQSS  ILPTPNNEGV  IWKLQSRSKT  DDILISKIVG  YGSTRSQGRY600
PLGKGENSRL  INSDGMYVAY  LKSQKLIKST  LQQSFFFNKA  TGKKVFITAT  PNEKYPGQGG660
AFSLVNGVYS  TKGLSYPDWI  GFIGDDLEAT  IDLGKTEKID  SVRMHTLNQN  GSWIYLPQYV720
EVFTSNNGKD  FTSVGKSSDF  IPDMLTMGWI  TVRVQKTSAR  YIKLLAKNYG  LIPDDKPGGG780
NKAWLFADEI  QVY793

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help