Information for CAZyme ID: QEC42840.1
Basic Information
| GenBank ID | QEC42840.1 |
| Family | GH66 |
| Sequence Length | 591 |
| UniProt ID | A0A4Q7N0R7(100,100) |
| Average pLDDT? | 93.08 |
| CAZy50 ID | 53642 |
| CAZy50 Rep | Yes, QEC42840.1 |
| Structure Cluster | SC_GH66_clus7 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 661488 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Pseudobacter |
| Species | Pseudobacter ginsenosidimutans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRPSAFRSSK YILCAFISGI ILWSSCKKDA PKNDPITYGN SFVLTINTDK AVYKPGETVQ | 60 |
| FSINRPLTGN LKLRYRHLME TVSEAAFTGN SWSWTAPAAD FTGYMVDIYE TIDGKEKIHA | 120 |
| STGIDVSSSW AKFPRYGFLS KYGQLTDTEI KAVMDNLTRH HINGLQFYDW QYKHHMPLAG | 180 |
| SPSAPQSVWK DLSNRDVYLS TLRSYIDAAH KSGMQAMFYN LAFGALSDAA ADGVQEEWYV | 240 |
| FKDQNHTTKD KHPLPLNFFK SDIYLTDAGN TNWQQYIAAK HNDVYQALNF DGFHIDQLGD | 300 |
| RGSIYTYNGA ALNQAATFKP FIQAMKTASP NKKLLMNAVN QYGQQNQIAT APVDFLYTEV | 360 |
| WGPNDEYSHL SNIIRNNNTY SSNTKPTVLA AYMNYNKADQ AGYFNTPGVL LTDAVIFAFG | 420 |
| GSHLELGEHM LGKEYFPNNN LLMPDELRNA IVRYYDFMVA YENLLRDGGI FNTPVVNCTN | 480 |
| GKATINNWPP AKGEVSVVGK EFTNRQVLHL VNFSNANSLE WRDSNGTQAK PAVIDNMELT | 540 |
| VSAAKTVKKV WIASPDSNNG VAAALNFTQA GNTITLTVPS LQYWDMIVLE Y | 591 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.08 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRPSAFRSSK YILCAFISGI ILWSSCKKDA PKNDPITYGN SFVLTINTDK AVYKPGETVQ | 60 |
| FSINRPLTGN LKLRYRHLME TVSEAAFTGN SWSWTAPAAD FTGYMVDIYE TIDGKEKIHA | 120 |
| STGIDVSSSW AKFPRYGFLS KYGQLTDTEI KAVMDNLTRH HINGLQFYDW QYKHHMPLAG | 180 |
| SPSAPQSVWK DLSNRDVYLS TLRSYIDAAH KSGMQAMFYN LAFGALSDAA ADGVQEEWYV | 240 |
| FKDQNHTTKD KHPLPLNFFK SDIYLTDAGN TNWQQYIAAK HNDVYQALNF DGFHIDQLGD | 300 |
| RGSIYTYNGA ALNQAATFKP FIQAMKTASP NKKLLMNAVN QYGQQNQIAT APVDFLYTEV | 360 |
| WGPNDEYSHL SNIIRNNNTY SSNTKPTVLA AYMNYNKADQ AGYFNTPGVL LTDAVIFAFG | 420 |
| GSHLELGEHM LGKEYFPNNN LLMPDELRNA IVRYYDFMVA YENLLRDGGI FNTPVVNCTN | 480 |
| GKATINNWPP AKGEVSVVGK EFTNRQVLHL VNFSNANSLE WRDSNGTQAK PAVIDNMELT | 540 |
| VSAAKTVKKV WIASPDSNNG VAAALNFTQA GNTITLTVPS LQYWDMIVLE Y | 591 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.