CAZyme3D

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Entry ID

Information for CAZyme ID: QEA34879.1

Basic Information

GenBank IDQEA34879.1
FamilyGT51
Sequence Length833
UniProt IDA0A288Q608(100,92.4)Download
Average pLDDT?78.61
CAZy50 ID24342
CAZy50 RepYes, QEA34879.1
Structure ClusterSC_GT51_clus72
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID155866
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusWeissella
SpeciesWeissella soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAEHLPSRGS  RTGSASITKK  RNHIPRNPNN  KKRSRLKTWQ  KVLLNVFLAL  VTLGIIGVIA60
GIGVFAYYAS  SSPKVTNAAL  VGTSQSQLLD  KQGNVIWVSG  NQKREIAAQS  EIPDKLRQAV120
ISVEDRRFYQ  HNGVDPRRII  GAAFADLTGS  SLGLQGGSTL  TQQLIKLTVF  STSAADQTLK180
RKAQDAWLAI  KLEKQYSKNQ  ILTLYMNKVY  EGNGIYGMKT  AASYYYGKDM  KDLTIPEMAL240
IAGMPQSPTA  YDPYTNPKYA  KARRDEVLLA  MSEPHYDPTA  KKKIAVITKA  QAKKYMAVPI300
TKGLLTTHED  EVTVAKSTKV  SNDYITSVLN  ELKTKGYNIN  TDGLTVQTNL  NMKVQQKAYD360
LVNDDAKATA  AGINFPDDKT  WNQSYVQTGI  TITDPRNGNV  MAQIGSRKSD  TLQGLNRATQ420
TTRSSGSTAK  PLVDYGPSIE  YLNWSTAQPV  PDIKAFTYKG  TSISVGDWGN  STPLYKTGIT480
MRKAITSSLN  VPALNTLQNL  WDNKIYIDQK  NGSHPWLSKL  GMSNVKLSTG  SAAIGIKIST540
EQEAAAFGAF  SNGGTYYKPN  YINSVTTQDG  VTHTIKSTGK  RAMKTSTAYM  ITSMLKSVTT600
VNDLGYYSTL  NPTSPSYTQA  GKSGTSDYAS  DSKFAEGKAQ  DLWFTGYTKS  AVISVWNGYD660
EPNNINVALD  GISGSASGNT  SRLPLQIYHA  LMNYVMSEES  NADGSKWKMP  STVEESTTSA720
GDYNVKDADP  TGVFTTDSGT  ALTASVGIGM  NSADATTQII  SSSSSSAGIS  SYSSSSSSVK780
SSSISSVSSS  SSSSSSSSSS  SSATTTSTPA  SGATDNTGTA  ATTNTGTTKS  NGN833

Predicted 3D structure by AlphaFold2 with pLDDT = 78.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAEHLPSRGS  RTGSASITKK  RNHIPRNPNN  KKRSRLKTWQ  KVLLNVFLAL  VTLGIIGVIA60
GIGVFAYYAS  SSPKVTNAAL  VGTSQSQLLD  KQGNVIWVSG  NQKREIAAQS  EIPDKLRQAV120
ISVEDRRFYQ  HNGVDPRRII  GAAFADLTGS  SLGLQGGSTL  TQQLIKLTVF  STSAADQTLK180
RKAQDAWLAI  KLEKQYSKNQ  ILTLYMNKVY  EGNGIYGMKT  AASYYYGKDM  KDLTIPEMAL240
IAGMPQSPTA  YDPYTNPKYA  KARRDEVLLA  MSEPHYDPTA  KKKIAVITKA  QAKKYMAVPI300
TKGLLTTHED  EVTVAKSTKV  SNDYITSVLN  ELKTKGYNIN  TDGLTVQTNL  NMKVQQKAYD360
LVNDDAKATA  AGINFPDDKT  WNQSYVQTGI  TITDPRNGNV  MAQIGSRKSD  TLQGLNRATQ420
TTRSSGSTAK  PLVDYGPSIE  YLNWSTAQPV  PDIKAFTYKG  TSISVGDWGN  STPLYKTGIT480
MRKAITSSLN  VPALNTLQNL  WDNKIYIDQK  NGSHPWLSKL  GMSNVKLSTG  SAAIGIKIST540
EQEAAAFGAF  SNGGTYYKPN  YINSVTTQDG  VTHTIKSTGK  RAMKTSTAYM  ITSMLKSVTT600
VNDLGYYSTL  NPTSPSYTQA  GKSGTSDYAS  DSKFAEGKAQ  DLWFTGYTKS  AVISVWNGYD660
EPNNINVALD  GISGSASGNT  SRLPLQIYHA  LMNYVMSEES  NADGSKWKMP  STVEESTTSA720
GDYNVKDADP  TGVFTTDSGT  ALTASVGIGM  NSADATTQII  SSSSSSAGIS  SYSSSSSSVK780
SSSISSVSSS  SSSSSSSSSS  SSATTTSTPA  SGATDNTGTA  ATTNTGTTKS  NGN833

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(94-271)

MAEHLPSRGS  RTGSASITKK  RNHIPRNPNN  KKRSRLKTWQ  KVLLNVFLAL  VTLGIIGVIA60
GIGVFAYYAS  SSPKVTNAAL  VGTSQSQLLD  KQGNVIWVSG  NQKREIAAQS  EIPDKLRQAV120
ISVEDRRFYQ  HNGVDPRRII  GAAFADLTGS  SLGLQGGSTL  TQQLIKLTVF  STSAADQTLK180
RKAQDAWLAI  KLEKQYSKNQ  ILTLYMNKVY  EGNGIYGMKT  AASYYYGKDM  KDLTIPEMAL240
IAGMPQSPTA  YDPYTNPKYA  KARRDEVLLA  MSEPHYDPTA  KKKIAVITKA  QAKKYMAVPI300
TKGLLTTHED  EVTVAKSTKV  SNDYITSVLN  ELKTKGYNIN  TDGLTVQTNL  NMKVQQKAYD360
LVNDDAKATA  AGINFPDDKT  WNQSYVQTGI  TITDPRNGNV  MAQIGSRKSD  TLQGLNRATQ420
TTRSSGSTAK  PLVDYGPSIE  YLNWSTAQPV  PDIKAFTYKG  TSISVGDWGN  STPLYKTGIT480
MRKAITSSLN  VPALNTLQNL  WDNKIYIDQK  NGSHPWLSKL  GMSNVKLSTG  SAAIGIKIST540
EQEAAAFGAF  SNGGTYYKPN  YINSVTTQDG  VTHTIKSTGK  RAMKTSTAYM  ITSMLKSVTT600
VNDLGYYSTL  NPTSPSYTQA  GKSGTSDYAS  DSKFAEGKAQ  DLWFTGYTKS  AVISVWNGYD660
EPNNINVALD  GISGSASGNT  SRLPLQIYHA  LMNYVMSEES  NADGSKWKMP  STVEESTTSA720
GDYNVKDADP  TGVFTTDSGT  ALTASVGIGM  NSADATTQII  SSSSSSAGIS  SYSSSSSSVK780
SSSISSVSSS  SSSSSSSSAT  TTSTPASGAT  DNTGTAATTN  TGTTKSSGN829

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help