CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QDZ24750.1

Basic Information

GenBank IDQDZ24750.1
FamilyCBM20
Sequence Length224
UniProt IDA0A5B8MZ07(100,100)Download
Average pLDDT?66.05
CAZy50 ID176975
CAZy50 RepYes, QDZ24750.1
Structure ClusterSC_CBM20_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1764295
KingdomEukaryota
PhylumChlorophyta
ClassChloropicophyceae
OrderChloropicales
FamilyChloropicaceae
GenusChloropicon
SpeciesChloropicon primus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTTSAKRLL  ATGGARGCAV  RYSRVVVTPT  RLARNRTTTL  AAAERTDEFS  EVFGDEPEET60
SFFSAQSVEK  TTPVTFELPL  SVAFGDEVCV  VGDAQGLGSW  SLSKAKKLEW  HDGDVWSAQV120
DLPSGADIQY  KYAITSHNQE  DAKWMPGPNF  SVSVPDSALD  VKDAWGQAKK  EQGMPGNGNG180
AADLSQADAL  SKMTVKEIKT  LLKDKGLPVS  GKKADLIGRL  IPHL224

Predicted 3D structure by AlphaFold2 with pLDDT = 66.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSTTSAKRLL  ATGGARGCAV  RYSRVVVTPT  RLARNRTTTL  AAAERTDEFS  EVFGDEPEET60
SFFSAQSVEK  TTPVTFELPL  SVAFGDEVCV  VGDAQGLGSW  SLSKAKKLEW  HDGDVWSAQV120
DLPSGADIQY  KYAITSHNQE  DAKWMPGPNF  SVSVPDSALD  VKDAWGQAKK  EQGMPGNGNG180
AADLSQADAL  SKMTVKEIKT  LLKDKGLPVS  GKKADLIGRL  IPHL224

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(73-157)

MSTTSAKRLL  ATGGARGCAV  RYSRVVVTPT  RLARNRTTTL  AAAERTDEFS  EVFGDEPEET60
SFFSAQSVEK  TTPVTFELPL  SVAFGDEVCV  VGDAQGLGSW  SLSKAKKLEW  HDGDVWSAQV120
DLPSGADIQY  KYAITSHNQE  DAKWMPGPNF  SVSVPDSALD  VKDAWGQAKK  EQGMPGNGNG180
AADLSQADAL  SKMTVKEIKT  LLKDKGLPVS  GKKADLIGRL  IPHL224

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help