CAZyme3D

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Entry ID

Information for CAZyme ID: QDZ17672.1

Basic Information

GenBank IDQDZ17672.1
FamilyGH5_7
Sequence Length457
UniProt IDA0A5B8MEE5(100,100)Download
Average pLDDT?85.54
CAZy50 ID78344
CAZy50 RepYes, QDZ17672.1
Structure ClusterSC_GH5_clus93
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1764295
KingdomEukaryota
PhylumChlorophyta
ClassChloropicophyceae
OrderChloropicales
FamilyChloropicaceae
GenusChloropicon
SpeciesChloropicon primus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAASRGRLA  WWWTLLLLAR  ASSAESLKRY  VEISKDGTSF  SLDGKDFYVH  GFNQPQMMTH60
AADESGRGKI  LEVLGDAELH  GFNVMRMWAF  NDGHSQWNSL  QLYPGVFDEK  VFRALDYVLH120
ESRRHKIRVL  LSLTNHWNEY  GGTNQYVQWA  KASANASQQG  GSSSFGPDAF  YSSVECRRLY180
KNFVAAVLER  RNVYTGIAYK  DDDYIFGWDL  INEPRAESAP  ALQAWIEEMA  GFVKSIDKKH240
LVTSGSEGFF  GKSTPDLTRY  NPGSWASAHG  VDFVRNHDIP  DIDFGVFHLY  ADLYLNSCEM300
DCALRFSEDY  VQAHLTSGLR  KPILLEEVGK  KGEGRDEYLE  VVLRKMHDDH  IGGGYGAGTV360
IWQLSPSNFS  DVDSFAIYLP  EHESTSSLVK  SFGVRVALRM  ASAFHNGMAV  VGWMRQIVTD420
KIRNFYGNRF  WAQHILPAGS  NPSVASFSNE  TSDPVLP457

Predicted 3D structure by AlphaFold2 with pLDDT = 85.54 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTAASRGRLA  WWWTLLLLAR  ASSAESLKRY  VEISKDGTSF  SLDGKDFYVH  GFNQPQMMTH60
AADESGRGKI  LEVLGDAELH  GFNVMRMWAF  NDGHSQWNSL  QLYPGVFDEK  VFRALDYVLH120
ESRRHKIRVL  LSLTNHWNEY  GGTNQYVQWA  KASANASQQG  GSSSFGPDAF  YSSVECRRLY180
KNFVAAVLER  RNVYTGIAYK  DDDYIFGWDL  INEPRAESAP  ALQAWIEEMA  GFVKSIDKKH240
LVTSGSEGFF  GKSTPDLTRY  NPGSWASAHG  VDFVRNHDIP  DIDFGVFHLY  ADLYLNSCEM300
DCALRFSEDY  VQAHLTSGLR  KPILLEEVGK  KGEGRDEYLE  VVLRKMHDDH  IGGGYGAGTV360
IWQLSPSNFS  DVDSFAIYLP  EHESTSSLVK  SFGVRVALRM  ASAFHNGMAV  VGWMRQIVTD420
KIRNFYGNRF  WAQHILPAGS  NPSVASFSNE  TSDPVLP457

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_7(69-364)

MTAASRGRLA  WWWTLLLLAR  ASSAESLKRY  VEISKDGTSF  SLDGKDFYVH  GFNQPQMMTH60
AADESGRGKI  LEVLGDAELH  GFNVMRMWAF  NDGHSQWNSL  QLYPGVFDEK  VFRALDYVLH120
ESRRHKIRVL  LSLTNHWNEY  GGTNQYVQWA  KASANASQQG  GSSSFGPDAF  YSSVECRRLY180
KNFVAAVLER  RNVYTGIAYK  DDDYIFGWDL  INEPRAESAP  ALQAWIEEMA  GFVKSIDKKH240
LVTSGSEGFF  GKSTPDLTRY  NPGSWASAHG  VDFVRNHDIP  DIDFGVFHLY  ADLYLNSCEM300
DCALRFSEDY  VQAHLTSGLR  KPILLEEVGK  KGEGRDEYLE  VVLRKMHDDH  IGGGYGAGTV360
IWQLSPSNFS  DVDSFAIYLP  EHESTSSLVK  SFGVRVALRM  ASAFHNGMAV  VGWMRQIVTD420
KIRNFYGNRF  WAQHILPAGS  NPSVASFSNE  TSDPVLP457

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help