Information for CAZyme ID: QDY90648.1
Basic Information
| GenBank ID | QDY90648.1 |
| Family | GH25 |
| Sequence Length | 854 |
| UniProt ID | A0A5B8K9C8(100,100) |
| Average pLDDT? | 84.50 |
| CAZy50 ID | 22574 |
| CAZy50 Rep | Yes, QDY90648.1 |
| Structure Cluster | SC_GH25_clus127 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2600159 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Micrococcaceae |
| Genus | Arthrobacter |
| Species | Arthrobacter sp. UKPF54-2 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKRIPISRTN NISPQVNFIL AVVLLMTSVG LAMPLPALAS PTPAPSGNPT ALPAPGPAPT | 60 |
| PTPDGRAVKS LPASAPVPLA RPDRTGLAAA IGAGAEMGQR SARVMRSSTG SQGSGIKTLT | 120 |
| PESLTTEGTW SPTFGVAGLD VSSHQPTVDW QQQWNMGARF AYVKATEGNY YPTEMDNPVY | 180 |
| KQTFDAQYAG ARNVGMIRGA YHFAIPNWSS GADQARYFVQ NGGGWSADGY TLPPVLDFEF | 240 |
| NPYAGRTISG FYFGDTCYGM SAVNLASWVR EFGNTMLSLT GRLPVIYTNT SWWNQCLGNV | 300 |
| SGLGNYPLWV ANYPDGPTNN AGPIPAGWSG FSLWQYSSTG PFAGDSNVWN GDYASLQRFA | 360 |
| SGFTVNPLGS IGMTWTALGG GNGKLGYPVT SEICGLVNGG CYQGFQNGTI HYAPGVGAYA | 420 |
| TWGGIRATWG ALGYENGKLG YPVTNEICGL ANGGCYQGFQ GGTIHYAPGV GAHATWGGIR | 480 |
| TSWGALGYEN GKLGYPVTNE ICGLANGGCY QGFQGGTIHY APGIGAYATW GGIRATWGAL | 540 |
| GYENGKLGYP VTNEICGLAN GGCYQGFQGG TIHYAPGIGA YATWGGIRAT WGALGYENGK | 600 |
| LGYPVTNEIC GLVNGGCYQG FQNGTIHYAP GIGAYATSGP IRATWGTLGY EKGKLGYPVT | 660 |
| NEICGLVNGG CYQGFQNGTI HYAPGIGAYA TSGPIRATWG TLGYEKGKLG YPTGVEVCGL | 720 |
| VNGGCSQDFQ GGAIHYAPGI GAHATWGGIR TTWGTLGYEN GKLGYPVTNE ICGLVNGGCY | 780 |
| QGYQNGTIHY APGIGAYATS GPIRATWGTL GYENGKLGYP VTNEISGLPN GGISQRFQHG | 840 |
| GITWSPTDGS VVLP | 854 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.50 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKRIPISRTN NISPQVNFIL AVVLLMTSVG LAMPLPALAS PTPAPSGNPT ALPAPGPAPT | 60 |
| PTPDGRAVKS LPASAPVPLA RPDRTGLAAA IGAGAEMGQR SARVMRSSTG SQGSGIKTLT | 120 |
| PESLTTEGTW SPTFGVAGLD VSSHQPTVDW QQQWNMGARF AYVKATEGNY YPTEMDNPVY | 180 |
| KQTFDAQYAG ARNVGMIRGA YHFAIPNWSS GADQARYFVQ NGGGWSADGY TLPPVLDFEF | 240 |
| NPYAGRTISG FYFGDTCYGM SAVNLASWVR EFGNTMLSLT GRLPVIYTNT SWWNQCLGNV | 300 |
| SGLGNYPLWV ANYPDGPTNN AGPIPAGWSG FSLWQYSSTG PFAGDSNVWN GDYASLQRFA | 360 |
| SGFTVNPLGS IGMTWTALGG GNGKLGYPVT SEICGLVNGG CYQGFQNGTI HYAPGVGAYA | 420 |
| TWGGIRATWG ALGYENGKLG YPVTNEICGL ANGGCYQGFQ GGTIHYAPGV GAHATWGGIR | 480 |
| TSWGALGYEN GKLGYPVTNE ICGLANGGCY QGFQGGTIHY APGIGAYATW GGIRATWGAL | 540 |
| GYENGKLGYP VTNEICGLAN GGCYQGFQGG TIHYAPGIGA YATWGGIRAT WGALGYENGK | 600 |
| LGYPVTNEIC GLVNGGCYQG FQNGTIHYAP GIGAYATSGP IRATWGTLGY EKGKLGYPVT | 660 |
| NEICGLVNGG CYQGFQNGTI HYAPGIGAYA TSGPIRATWG TLGYEKGKLG YPTGVEVCGL | 720 |
| VNGGCSQDFQ GGAIHYAPGI GAHATWGGIR TTWGTLGYEN GKLGYPVTNE ICGLVNGGCY | 780 |
| QGYQNGTIHY APGIGAYATS GPIRATWGTL GYENGKLGYP VTNEISGLPN GGISQRFQHG | 840 |
| GITWSPTDGS VVLP | 854 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.