CAZyme3D

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Entry ID

Information for CAZyme ID: QDY85834.1

Basic Information

GenBank IDQDY85834.1
FamilyGH32
Sequence Length472
UniProt IDA0A5B8K436(100,100)Download
Average pLDDT?94.15
CAZy50 ID75063
CAZy50 RepYes, QDY85834.1
Structure ClusterSC_GH32_clus93
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1406
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKSDAYHLK  YHITPPYGLL  NDPNGLAFFK  HQYHVFYQWN  PKGTEHRNKC  WGHVVSSDLV60
HWQRKSVALE  PSEWYDKDGI  YSGGAIVHQE  KLYLFYTGNV  IRDDGVKESY  QCAAISEDGE120
HFQKMGPLFE  HPKGYTRHVR  DPKVWRDRNG  NWWLIVGAQR  EDLTGDTLIY  KSTDLSVWEC180
QGSFLEHDRE  FGYMWECPDL  LHFAENDIFV  FSPQGLPEAG  EYYRNPNQSG  YMVGKFMDTG240
KFNGNLAHFK  ELDRGFDFYA  PQSFKVNDRT  IMFGWMSGMN  EEAERAVPTI  QEGWIHALTL300
PREIVLSNGV  LYQKPLPELQ  WLRLDGEHSQ  KDIHKNGVWL  LPSLQVECIV  HFSKLTENFK360
MIIRNAVEIN  YDSAENSITV  WRTNWLTNQR  EYRKATLANQ  LADMQIFIES  SSLEIFLNEG420
EEVFTLRYFL  EDTEQRSVVL  EAGDNEGKIE  IYQLQECDVI  INPQNDMSIF  HL472

Predicted 3D structure by AlphaFold2 with pLDDT = 94.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNKSDAYHLK  YHITPPYGLL  NDPNGLAFFK  HQYHVFYQWN  PKGTEHRNKC  WGHVVSSDLV60
HWQRKSVALE  PSEWYDKDGI  YSGGAIVHQE  KLYLFYTGNV  IRDDGVKESY  QCAAISEDGE120
HFQKMGPLFE  HPKGYTRHVR  DPKVWRDRNG  NWWLIVGAQR  EDLTGDTLIY  KSTDLSVWEC180
QGSFLEHDRE  FGYMWECPDL  LHFAENDIFV  FSPQGLPEAG  EYYRNPNQSG  YMVGKFMDTG240
KFNGNLAHFK  ELDRGFDFYA  PQSFKVNDRT  IMFGWMSGMN  EEAERAVPTI  QEGWIHALTL300
PREIVLSNGV  LYQKPLPELQ  WLRLDGEHSQ  KDIHKNGVWL  LPSLQVECIV  HFSKLTENFK360
MIIRNAVEIN  YDSAENSITV  WRTNWLTNQR  EYRKATLANQ  LADMQIFIES  SSLEIFLNEG420
EEVFTLRYFL  EDTEQRSVVL  EAGDNEGKIE  IYQLQECDVI  INPQNDMSIF  HL472

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(12-315)

MNKSDAYHLK  YHITPPYGLL  NDPNGLAFFK  HQYHVFYQWN  PKGTEHRNKC  WGHVVSSDLV60
HWQRKSVALE  PSEWYDKDGI  YSGGAIVHQE  KLYLFYTGNV  IRDDGVKESY  QCAAISEDGE120
HFQKMGPLFE  HPKGYTRHVR  DPKVWRDRNG  NWWLIVGAQR  EDLTGDTLIY  KSTDLSVWEC180
QGSFLEHDRE  FGYMWECPDL  LHFAENDIFV  FSPQGLPEAG  EYYRNPNQSG  YMVGKFMDTG240
KFNGNLAHFK  ELDRGFDFYA  PQSFKVNDRT  IMFGWMSGMN  EEAERAVPTI  QEGWIHALTL300
PREIVLSNGV  LYQKPLPELQ  WLRLDGEHSQ  KDIHKNGVWL  LPSLQVECIV  HFSKLTENFK360
MIIRNAVEIN  YDSAENSITV  WRTNWLTNQR  EYRKATLANQ  LADMQIFIES  SSLEIFLNEG420
EEVFTLRYFL  EDTEQRSVVL  EAGDNEGKIE  IYQLQECDVI  INPQNDMSIF  HL472

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help