CAZyme3D

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Entry ID

Information for CAZyme ID: QDV61570.1

Basic Information

GenBank IDQDV61570.1
FamilyPL10_1
Sequence Length781
UniProt IDA0A5C6FLX5(94.6,100)Download
Average pLDDT?89.66
CAZy50 ID29331
CAZy50 RepYes, QDV61570.1
Structure ClusterSC_PL10_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527996
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusCrateriforma
SpeciesCrateriforma conspicua

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLHRRHLHVL  QWCLSAILIL  IVAGKSADAQ  IRFDKNLLRN  DDAWFQSDVA  REVADNVIQY60
QSPQGGWPKS  TDLAKPPRSP  DDIPRPGDGR  ANSLDNDATT  VPMQFLARMA  HETGDIRYRD120
SFLKGVDYLL  AAQYPGGGWP  QFWPLRKGYY  SHITFNDGAM  IRVMHLLRDV  ADGEAPYGFV180
DGMRRRKAAE  AVRIGIECIL  KCQVVFDGVP  TVWCAQHDVK  TLAPAQARSY  EHPSLSGSES240
AGVLIFLMSV  SDPTPEMMRA  VQAGVEWFDS  VKIEGYRYNK  SQTGLALTKD  QQAGPLWARF300
YEIKSNRPIF  SDRDGVIKYD  IQEIGDERRG  GYSWYGNWGQ  KVAQKYAQWP  HREGAKKRLR360
SRSRRIPEHS  GASGYRCRVI  VSTDIGGTDP  DDFQSMVHLL  VYSDLLDLEG  LVSSPYGEGR420
MKDILDVIDC  YEQDYECLSS  YSDKYPNPDI  LRAITKQGEI  ERAPYAGVRR  PTEGSRWIID480
CAHRDDPRPL  YLLVWGGLED  VAQALNDAPE  ILPKLRVYWI  GGPNKKWSPD  AYQYVVDHHP540
TLWMIESNAT  YRGWYTGGDQ  SGVWGNEQFV  SEHIKGIGAL  GNFFVRQKAD  IKMGDTPSVG600
WLLNGRLEDP  SHPGWGGRYV  RAWKRPNLKL  NRLPKESDRF  QVFGILELVI  PAGDAPPDAK660
ATLIVENQRL  IGHLADDRTM  RFRFCPKAAK  QYSFQLESTV  ASLDGLRGAI  TACAPEPSVA720
ARPDTRLPNW  WTDDLAPSLA  EGPHSGAKTV  SRWRESYLSD  FAGRILRCQR  PVPVNSAELA780
P781

Predicted 3D structure by AlphaFold2 with pLDDT = 89.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLHRRHLHVL  QWCLSAILIL  IVAGKSADAQ  IRFDKNLLRN  DDAWFQSDVA  REVADNVIQY60
QSPQGGWPKS  TDLAKPPRSP  DDIPRPGDGR  ANSLDNDATT  VPMQFLARMA  HETGDIRYRD120
SFLKGVDYLL  AAQYPGGGWP  QFWPLRKGYY  SHITFNDGAM  IRVMHLLRDV  ADGEAPYGFV180
DGMRRRKAAE  AVRIGIECIL  KCQVVFDGVP  TVWCAQHDVK  TLAPAQARSY  EHPSLSGSES240
AGVLIFLMSV  SDPTPEMMRA  VQAGVEWFDS  VKIEGYRYNK  SQTGLALTKD  QQAGPLWARF300
YEIKSNRPIF  SDRDGVIKYD  IQEIGDERRG  GYSWYGNWGQ  KVAQKYAQWP  HREGAKKRLR360
SRSRRIPEHS  GASGYRCRVI  VSTDIGGTDP  DDFQSMVHLL  VYSDLLDLEG  LVSSPYGEGR420
MKDILDVIDC  YEQDYECLSS  YSDKYPNPDI  LRAITKQGEI  ERAPYAGVRR  PTEGSRWIID480
CAHRDDPRPL  YLLVWGGLED  VAQALNDAPE  ILPKLRVYWI  GGPNKKWSPD  AYQYVVDHHP540
TLWMIESNAT  YRGWYTGGDQ  SGVWGNEQFV  SEHIKGIGAL  GNFFVRQKAD  IKMGDTPSVG600
WLLNGRLEDP  SHPGWGGRYV  RAWKRPNLKL  NRLPKESDRF  QVFGILELVI  PAGDAPPDAK660
ATLIVENQRL  IGHLADDRTM  RFRFCPKAAK  QYSFQLESTV  ASLDGLRGAI  TACAPEPSVA720
ARPDTRLPNW  WTDDLAPSLA  EGPHSGAKTV  SRWRESYLSD  FAGRILRCQR  PVPVNSAELA780
P781

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_1(61-342)

MLHRRHLHAL  HLCLSAILIL  IVSGKSTDAQ  IRFDKNLLRN  DDAWFQSDVA  RAVADNVIQY60
QSPQGGWPKS  TNLARPPRAP  DDIPRPGDGR  ANSLDNDATT  VPMQFLARMA  HETGDIRYRD120
SFLKGVDYLL  AAQYPGGGWP  QFWPLRKGYY  SHITFNDGAM  IRVMHLLRDV  ADGEAPYGFV180
DGMRRRKAAE  AVRLGIECIL  KCQVVVDGVP  TVWCAQHDVK  TLAPTQARSY  EHPSLSGSES240
AGVLIFLMSV  SDPTPEMMRA  VQAGVEWFDS  VKIEGYRYNK  SQTGLALTKD  QQAAALWARF300
YEIKSNRPIF  SDRDGVIRYD  IQEIGGERRG  GYSWYGDWGQ  KVAQKYSQWP  HHEGVKKQLR360
SRSRRIPEHS  GASSHRYRAI  VSTDIGGTDP  DDFQSMVHLL  VYSDLLDLEG  LVSSPYGEGR420
MKDILDVIDC  YEQDYECLSS  YSDKYPNPDI  LRAITKQGEI  ERAPYAGVRR  PTEGSRWIID480
CAHRDDSRPL  CLLVWGGLED  VAQALNDAPG  ILPKLRVYWI  GGPNKKWSPD  AYQYIVDHHP540
TLWMIESNAT  YRGWFTGGDQ  SGVWGNERFV  SEHIKGIGAL  GTFFVRQKAD  IKMGDTPSVG600
WLLNGRLEDP  SRPGWGGRYV  RAWKRPNLKL  NRLPKESDRI  EVFGILELVI  PAGDAPPDAK660
ATLIVENQRL  IGHLADDRTM  RFRFCPKAAK  QYSFQLESNV  ASLDGLRGAI  TACAPEPSVA720
ARPDTRLPNW  WTDDLTPSLA  EGPHSGAKTV  SRWRESYLSD  FAGRILRCQR  PATVNAAEVT780
P781

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help