CAZyme3D

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Entry ID

Information for CAZyme ID: QDU16880.1

Basic Information

GenBank IDQDU16880.1
FamilyGH156
Sequence Length558
UniProt IDA0A3D3R742(97.5,100)Download
Average pLDDT?88.63
CAZy50 ID58253
CAZy50 RepYes, QDU16880.1
Structure ClusterSC_GH156_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID122
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia maris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLFSIENLRD  IKEHFDQKVP  LMPFHMLRLL  LLPAIVIIGH  TYLERSVDAA  EKNAALSPSQ60
QQSMQAARQK  AAWKKRRIIF  NNDGNEPVYS  LKEATPQALL  DVRTSPLKGS  QVDTIFYCTW120
SSGFSYFTHD  TKVGNVFTET  ANKLSNNKTA  ELIQNGHDPL  TVMSDWCKEN  DVELFWSFRM180
NDTHDASSAW  YGPLLFPPLK  KEHPEWLVGS  AKERPKNGRW  TAVDFTHEEI  CDLAYRYVEE240
VCRNYDVDGV  ELDFFRHLNY  FKRVSWGEPA  GDLELSRLND  LMRRIRTMAD  EAGQQRGRPI300
LIAIRVPDSV  EYARVLGLDV  ETWLKEDLVD  IMTVTGYFRL  NPWKESVELG  HKYQVPVYAG360
LSESRQKDQR  ARKVYASTEG  FRGRAMNAWS  QGIDGIYLFN  SFNPRHPLWR  ELGDPTQLQS420
LPKVYFTSAR  GYASVNSWWK  KGSSYMNRDI  LTPDHPRVVR  PGKSVSVTLP  VGENPVETGA480
TLNLKVRFKA  LPQIKEELIV  KLNGEVVPLH  AGEEHFLSGK  IKPGFVRTGE  NQIEFTLASA540
AALPVVVEDL  QLWINYAE558

Predicted 3D structure by AlphaFold2 with pLDDT = 88.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLFSIENLRD  IKEHFDQKVP  LMPFHMLRLL  LLPAIVIIGH  TYLERSVDAA  EKNAALSPSQ60
QQSMQAARQK  AAWKKRRIIF  NNDGNEPVYS  LKEATPQALL  DVRTSPLKGS  QVDTIFYCTW120
SSGFSYFTHD  TKVGNVFTET  ANKLSNNKTA  ELIQNGHDPL  TVMSDWCKEN  DVELFWSFRM180
NDTHDASSAW  YGPLLFPPLK  KEHPEWLVGS  AKERPKNGRW  TAVDFTHEEI  CDLAYRYVEE240
VCRNYDVDGV  ELDFFRHLNY  FKRVSWGEPA  GDLELSRLND  LMRRIRTMAD  EAGQQRGRPI300
LIAIRVPDSV  EYARVLGLDV  ETWLKEDLVD  IMTVTGYFRL  NPWKESVELG  HKYQVPVYAG360
LSESRQKDQR  ARKVYASTEG  FRGRAMNAWS  QGIDGIYLFN  SFNPRHPLWR  ELGDPTQLQS420
LPKVYFTSAR  GYASVNSWWK  KGSSYMNRDI  LTPDHPRVVR  PGKSVSVTLP  VGENPVETGA480
TLNLKVRFKA  LPQIKEELIV  KLNGEVVPLH  AGEEHFLSGK  IKPGFVRTGE  NQIEFTLASA540
AALPVVVEDL  QLWINYAE558

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH156(37-541)

MTDEDILLLY  SIENLRDIKE  HFDQKVPLMP  FHMLRLLLLP  AIVIIGHTYL  ERSVDAAEKN60
ATLSPSQQQS  MQAARQKAAW  KKRRIIFNND  GNEPVYSLKE  ATPQALLDVR  TSPLKGSQVD120
SIFYCTWSSG  FSYFTHDTKV  GNVFTETANK  LSNNKTAELI  KNGHDPLTVM  SDWCKENDVE180
LFWSFRMNDT  HDASSAWYGP  LLFPPLKKEH  PEWLVGSAKE  KPKNGRWTAV  DFTHEEICDL240
AFQYVEEVCR  NYDVDGVELD  FFRHLNYFKR  VSWGEPAGDL  ELSRLNDLMR  RIRTMADEVG300
HQRGRPILIA  IRVPDSVEYA  RVLGLDVETW  LKEDLVDIMT  VTGYFRLNPW  KESVELGHKY360
QVPVYAGLSE  SRQKDQRARK  VYASTEGFRG  RAMNAWSQGI  DGIYLFNSFN  PRHPLWRELG420
DPTRLQSLPK  VYFTSARGYA  SVNSWWKKGS  SFMNRDILTP  DHPRVVRPGK  SVSVTLPVGE480
NPVETGATLN  LKVRFKALPQ  NKEELIVKLN  GEVVPLHAGE  EHFLSGKIKP  GIVRTGENQI540
EFTLASAAAL  PVVVEDLQLW  INYAE565

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help