Information for CAZyme ID: QDU16880.1
Basic Information
GenBank ID | QDU16880.1 |
Family | GH156 |
Sequence Length | 558 |
UniProt ID | A0A3D3R742(97.5,100)![]() |
Average pLDDT? | 88.63 |
CAZy50 ID | 58253 |
CAZy50 Rep | Yes, QDU16880.1 |
Structure Cluster | SC_GH156_clus9 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 122 |
Kingdom | Bacteria |
Phylum | Planctomycetota |
Class | Planctomycetia |
Order | Planctomycetales |
Family | Planctomycetaceae |
Genus | Gimesia |
Species | Gimesia maris |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLFSIENLRD IKEHFDQKVP LMPFHMLRLL LLPAIVIIGH TYLERSVDAA EKNAALSPSQ | 60 |
QQSMQAARQK AAWKKRRIIF NNDGNEPVYS LKEATPQALL DVRTSPLKGS QVDTIFYCTW | 120 |
SSGFSYFTHD TKVGNVFTET ANKLSNNKTA ELIQNGHDPL TVMSDWCKEN DVELFWSFRM | 180 |
NDTHDASSAW YGPLLFPPLK KEHPEWLVGS AKERPKNGRW TAVDFTHEEI CDLAYRYVEE | 240 |
VCRNYDVDGV ELDFFRHLNY FKRVSWGEPA GDLELSRLND LMRRIRTMAD EAGQQRGRPI | 300 |
LIAIRVPDSV EYARVLGLDV ETWLKEDLVD IMTVTGYFRL NPWKESVELG HKYQVPVYAG | 360 |
LSESRQKDQR ARKVYASTEG FRGRAMNAWS QGIDGIYLFN SFNPRHPLWR ELGDPTQLQS | 420 |
LPKVYFTSAR GYASVNSWWK KGSSYMNRDI LTPDHPRVVR PGKSVSVTLP VGENPVETGA | 480 |
TLNLKVRFKA LPQIKEELIV KLNGEVVPLH AGEEHFLSGK IKPGFVRTGE NQIEFTLASA | 540 |
AALPVVVEDL QLWINYAE | 558 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.63 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MLFSIENLRD IKEHFDQKVP LMPFHMLRLL LLPAIVIIGH TYLERSVDAA EKNAALSPSQ | 60 |
QQSMQAARQK AAWKKRRIIF NNDGNEPVYS LKEATPQALL DVRTSPLKGS QVDTIFYCTW | 120 |
SSGFSYFTHD TKVGNVFTET ANKLSNNKTA ELIQNGHDPL TVMSDWCKEN DVELFWSFRM | 180 |
NDTHDASSAW YGPLLFPPLK KEHPEWLVGS AKERPKNGRW TAVDFTHEEI CDLAYRYVEE | 240 |
VCRNYDVDGV ELDFFRHLNY FKRVSWGEPA GDLELSRLND LMRRIRTMAD EAGQQRGRPI | 300 |
LIAIRVPDSV EYARVLGLDV ETWLKEDLVD IMTVTGYFRL NPWKESVELG HKYQVPVYAG | 360 |
LSESRQKDQR ARKVYASTEG FRGRAMNAWS QGIDGIYLFN SFNPRHPLWR ELGDPTQLQS | 420 |
LPKVYFTSAR GYASVNSWWK KGSSYMNRDI LTPDHPRVVR PGKSVSVTLP VGENPVETGA | 480 |
TLNLKVRFKA LPQIKEELIV KLNGEVVPLH AGEEHFLSGK IKPGFVRTGE NQIEFTLASA | 540 |
AALPVVVEDL QLWINYAE | 558 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.