Information for CAZyme ID: QDT05411.1
Basic Information
| GenBank ID | QDT05411.1 |
| Family | GH141 |
| Sequence Length | 939 |
| UniProt ID | A0A517NE63(100,100) |
| Average pLDDT? | 89.68 |
| CAZy50 ID | 17157 |
| CAZy50 Rep | Yes, QDT05411.1 |
| Structure Cluster | SC_GH141_clus32 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1930273 |
| Kingdom | Bacteria |
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Pirellulales |
| Family | Pirellulaceae |
| Genus | Rubripirellula |
| Species | Rubripirellula lacrimiformis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MAQRTQIATT LVATRLAIAC LLGHACLTGS CLAAPFPAGP AFTDAIPTNA VPTDADTANQ | 60 |
| RATIDYHVAT DGSDDHPGTV QQPFASVHRA QVAARAARVS NPDQAITVHI HPGRYRLRRP | 120 |
| LTFQPADSGA SRDLPVLYRG VPGGEVVLSG GRDVTDWEKV VEDPGLWKTR LPHADPGGRQ | 180 |
| VDGDAQDWQI EQLWVNGRRA VRARDPDEGQ FYVLLGSSES PQPDEKWVFR HTYATSDGDL | 240 |
| RALDGVDPES LKHAELFVFH KWETTREPIV TADPQRNLFT TRGEIMKPHN PMTRDCLYYF | 300 |
| ENLRAALDSQ GEWFLDHDGW LYYRPRDDED MTSAEVVAAT IPRLIDIQGD IRDSVTRVKH | 360 |
| LHFEGLKLRH TSFRTPDRGI RSNQAAMNID STAVQVDAAE DIQFVDVAVE HVGGTGFWFR | 420 |
| KACRDCRVER SRVFDIGVSA VRIGETGLVP DDVRTGGITI DNCILHSGGR VAPHAVGVWI | 480 |
| GHSGDNQITH CDVADFFYTA VSVGWRWGYA ESGAKRNRIQ YNHLHHVGYR ILSDMGGVYT | 540 |
| LGPSEGTIVS HNVIHDIYAT RYGGWGLYPD EGSSHIRFEN NLVYNVRDGG FHQHYGRENI | 600 |
| ACNNIFAFSE EGQIAVTRAE PHRSFTFKRN LVYWDRGHLL GYSGWTQGSK VRMRNNLYWR | 660 |
| VGGQPFDFAG KTWQQWQADG NDEGSIIADP MFVDPLNHDF RLAPDSPAKR IGFVPFDIGL | 720 |
| AGVQGSADWQ DLAKSTSFRE PFLVPPSPRF QFDNDFEDDH PVSMLGMSTK SLEGKDNLIR | 780 |
| MSDNPDGPGR CLQVQDDPNM KAAYNPHFYW DPKYTTGRSH MSFRIRLDPT SNVACQWRDR | 840 |
| SAPYRTGPSL QFSGQAVHSR GRKLLDLPAD TWLDVTMEAI QGRPDSQWRV TFGLPNGQSQ | 900 |
| EVSGLTCDPG WTDTRWVGFI SSATDDSSFY LDDVSMRNQ | 939 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.68 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MAQRTQIATT LVATRLAIAC LLGHACLTGS CLAAPFPAGP AFTDAIPTNA VPTDADTANQ | 60 |
| RATIDYHVAT DGSDDHPGTV QQPFASVHRA QVAARAARVS NPDQAITVHI HPGRYRLRRP | 120 |
| LTFQPADSGA SRDLPVLYRG VPGGEVVLSG GRDVTDWEKV VEDPGLWKTR LPHADPGGRQ | 180 |
| VDGDAQDWQI EQLWVNGRRA VRARDPDEGQ FYVLLGSSES PQPDEKWVFR HTYATSDGDL | 240 |
| RALDGVDPES LKHAELFVFH KWETTREPIV TADPQRNLFT TRGEIMKPHN PMTRDCLYYF | 300 |
| ENLRAALDSQ GEWFLDHDGW LYYRPRDDED MTSAEVVAAT IPRLIDIQGD IRDSVTRVKH | 360 |
| LHFEGLKLRH TSFRTPDRGI RSNQAAMNID STAVQVDAAE DIQFVDVAVE HVGGTGFWFR | 420 |
| KACRDCRVER SRVFDIGVSA VRIGETGLVP DDVRTGGITI DNCILHSGGR VAPHAVGVWI | 480 |
| GHSGDNQITH CDVADFFYTA VSVGWRWGYA ESGAKRNRIQ YNHLHHVGYR ILSDMGGVYT | 540 |
| LGPSEGTIVS HNVIHDIYAT RYGGWGLYPD EGSSHIRFEN NLVYNVRDGG FHQHYGRENI | 600 |
| ACNNIFAFSE EGQIAVTRAE PHRSFTFKRN LVYWDRGHLL GYSGWTQGSK VRMRNNLYWR | 660 |
| VGGQPFDFAG KTWQQWQADG NDEGSIIADP MFVDPLNHDF RLAPDSPAKR IGFVPFDIGL | 720 |
| AGVQGSADWQ DLAKSTSFRE PFLVPPSPRF QFDNDFEDDH PVSMLGMSTK SLEGKDNLIR | 780 |
| MSDNPDGPGR CLQVQDDPNM KAAYNPHFYW DPKYTTGRSH MSFRIRLDPT SNVACQWRDR | 840 |
| SAPYRTGPSL QFSGQAVHSR GRKLLDLPAD TWLDVTMEAI QGRPDSQWRV TFGLPNGQSQ | 900 |
| EVSGLTCDPG WTDTRWVGFI SSATDDSSFY LDDVSMRNQ | 939 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.