CAZyme3D

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Entry ID

Information for CAZyme ID: QDQ26674.1

Basic Information

GenBank IDQDQ26674.1
FamilyGH5_57
Sequence Length402
UniProt IDA0A516SET1(100,100)Download
Average pLDDT?90.11
CAZy50 ID97961
CAZy50 RepYes, QDQ26674.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2594795
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNeisseriales
FamilyChitinibacteraceae
GenusChitinimonas
SpeciesChitinimonas arctica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAWINRLAV  VAALCIAAAS  SHAGQLTVGS  DGSLLKNGRP  YRAIGVNYFS  GLYRALSNPR60
DKTYVYGFRE  LASHKVPFVR  VMLGGFWPSE  MKLYQRDREA  YFKVVDAFMD  AAESNEIGIV120
ASLNWNYATV  PDMVGEPASA  WGKRDSKTIK  FMRAYTKDMV  ERYGSRKIVW  AWEFGNEMTL180
RADLPNAKDF  LPKVDTRKGT  PARRTQADII  TSADTVTAFK  EFAQAVRQVS  PDAMLSTGNS240
LPRRYAHHNS  NAKNKGVAAA  SMWESDTEEQ  FCSIIQRDNP  AEYGLLSVHI  YPGENEGYFG300
KKLPDYPNLI  KATERCAKKL  KRPLFIGEFG  IDARIYHGDT  RRERADFEEL  LGAIEQSSVA360
LSALWVYDYV  YQNGSFNVTG  SNNRAYQLKA  IEQANEQLGG  VK402

Predicted 3D structure by AlphaFold2 with pLDDT = 90.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKAWINRLAV  VAALCIAAAS  SHAGQLTVGS  DGSLLKNGRP  YRAIGVNYFS  GLYRALSNPR60
DKTYVYGFRE  LASHKVPFVR  VMLGGFWPSE  MKLYQRDREA  YFKVVDAFMD  AAESNEIGIV120
ASLNWNYATV  PDMVGEPASA  WGKRDSKTIK  FMRAYTKDMV  ERYGSRKIVW  AWEFGNEMTL180
RADLPNAKDF  LPKVDTRKGT  PARRTQADII  TSADTVTAFK  EFAQAVRQVS  PDAMLSTGNS240
LPRRYAHHNS  NAKNKGVAAA  SMWESDTEEQ  FCSIIQRDNP  AEYGLLSVHI  YPGENEGYFG300
KKLPDYPNLI  KATERCAKKL  KRPLFIGEFG  IDARIYHGDT  RRERADFEEL  LGAIEQSSVA360
LSALWVYDYV  YQNGSFNVTG  SNNRAYQLKA  IEQANEQLGG  VK402

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5(37-399)

MKAWINRLAV  VAALCIAAAS  SHAGQLTVGS  DGSLLKNGRP  YRAIGVNYFS  GLYRALSNPR60
DKTYVYGFRE  LASHKVPFVR  VMLGGFWPSE  MKLYQRDREA  YFKVVDAFMD  AAESNEIGIV120
ASLNWNYATV  PDMVGEPASA  WGKRDSKTIK  FMRAYTKDMV  ERYGSRKIVW  AWEFGNEMTL180
RADLPNAKDF  LPKVDTRKGT  PARRTQADII  TSADTVTAFK  EFAQAVRQVS  PDAMLSTGNS240
LPRRYAHHNS  NAKNKGVAAA  SMWESDTEEQ  FCSIIQRDNP  AEYGLLSVHI  YPGENEGYFG300
KKLPDYPNLI  KATERCAKKL  KRPLFIGEFG  IDARIYHGDT  RRERADFEEL  LGAIEQSSVA360
LSALWVYDYV  YQNGSFNVTG  SNNRAYQLKA  IEQANEQLGG  VK402

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help