CAZyme3D

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Entry ID

Information for CAZyme ID: QDH22485.1

Basic Information

GenBank IDQDH22485.1
FamilyGH32
Sequence Length542
UniProt IDA0A4Y6V2L4(100,100)Download
Average pLDDT?91.59
CAZy50 ID60861
CAZy50 RepYes, QDH22485.1
Structure ClusterSC_GH32_clus86
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2583377
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusSaccharibacillus
SpeciesSaccharibacillus brassicae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPMTRAQKYR  LLRQAEAGEL  ERLAERAADC  AWRQTYHIQP  HAGLLNDPNG  FAYYNGQYHL60
FYQWFPLGTE  HGMKYWYHVV  SSDLARWTDA  GIGLEPGGLY  DSHGAYSGSA  IEKDGRLYLM120
YTGNTRDADW  VRRPYQCLAV  MDEDGTIAKT  ELPVIADVPA  GYTDHFRDPK  VWREGDAYLC180
VIGAQRSDLT  GAAVLYRSPD  LLDWNFAGEI  RTSLPNFGYM  WECPDYFELD  GTGVLLLCPQ240
GVERDGERFR  NIYPSGYLLG  EPLNTADGTF  RHGAFAELDR  GFDFYAPQTT  AGPDGQRLLV300
GWMGLPDLDY  PTDGLGWAHC  LTLPRELSLR  GGRLIQRPAA  GLRLLRGEER  SFSAAWADGR360
RSFDRIEGRS  YELQVRIAPA  AQRPGSADGG  AEDGESSANR  STDRELPGSG  SGRFGVEFRT420
GVEERTILTY  DAGSRTVTLD  RSRSGVPLGI  DYGTTRSCTL  DAAGRQDVEF  RLFVDTSSVE480
IFVNDGEEVF  TARLFPDSAS  TGIAFFADGG  GAAFEGSYWP  YGEGAIPRGL  PAGLADYGQV540
RP542

Predicted 3D structure by AlphaFold2 with pLDDT = 91.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPMTRAQKYR  LLRQAEAGEL  ERLAERAADC  AWRQTYHIQP  HAGLLNDPNG  FAYYNGQYHL60
FYQWFPLGTE  HGMKYWYHVV  SSDLARWTDA  GIGLEPGGLY  DSHGAYSGSA  IEKDGRLYLM120
YTGNTRDADW  VRRPYQCLAV  MDEDGTIAKT  ELPVIADVPA  GYTDHFRDPK  VWREGDAYLC180
VIGAQRSDLT  GAAVLYRSPD  LLDWNFAGEI  RTSLPNFGYM  WECPDYFELD  GTGVLLLCPQ240
GVERDGERFR  NIYPSGYLLG  EPLNTADGTF  RHGAFAELDR  GFDFYAPQTT  AGPDGQRLLV300
GWMGLPDLDY  PTDGLGWAHC  LTLPRELSLR  GGRLIQRPAA  GLRLLRGEER  SFSAAWADGR360
RSFDRIEGRS  YELQVRIAPA  AQRPGSADGG  AEDGESSANR  STDRELPGSG  SGRFGVEFRT420
GVEERTILTY  DAGSRTVTLD  RSRSGVPLGI  DYGTTRSCTL  DAAGRQDVEF  RLFVDTSSVE480
IFVNDGEEVF  TARLFPDSAS  TGIAFFADGG  GAAFEGSYWP  YGEGAIPRGL  PAGLADYGQV540
RP542

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(37-338)

MPMTRAQKYR  LLRQAEAGEL  ERLAERAADC  AWRQTYHIQP  HAGLLNDPNG  FAYYNGQYHL60
FYQWFPLGTE  HGMKYWYHVV  SSDLARWTDA  GIGLEPGGLY  DSHGAYSGSA  IEKDGRLYLM120
YTGNTRDADW  VRRPYQCLAV  MDEDGTIAKT  ELPVIADVPA  GYTDHFRDPK  VWREGDAYLC180
VIGAQRSDLT  GAAVLYRSPD  LLDWNFAGEI  RTSLPNFGYM  WECPDYFELD  GTGVLLLCPQ240
GVERDGERFR  NIYPSGYLLG  EPLNTADGTF  RHGAFAELDR  GFDFYAPQTT  AGPDGQRLLV300
GWMGLPDLDY  PTDGLGWAHC  LTLPRELSLR  GGRLIQRPAA  GLRLLRGEER  SFSAAWADGR360
RSFDRIEGRS  YELQVRIAPA  AQRPGSADGG  AEDGESSANR  STDRELPGSG  SGRFGVEFRT420
GVEERTILTY  DAGSRTVTLD  RSRSGVPLGI  DYGTTRSCTL  DAAGRQDVEF  RLFVDTSSVE480
IFVNDGEEVF  TARLFPDSAS  TGIAFFADGG  GAAFEGSYWP  YGEGAIPRGL  PAGLADYGQV540
RP542

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help