CAZyme3D

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Entry ID

Information for CAZyme ID: QDH18034.1

Basic Information

GenBank IDQDH18034.1
FamilyGT112
Sequence Length442
UniProt IDA0A4Y6ULV0(100,100)Download
Average pLDDT?86.41
CAZy50 ID82124
CAZy50 RepYes, QDH18034.1
Structure ClusterSC_GT112_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1293412
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusSwingsia
SpeciesSwingsia samuiensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MISKKKSLSE  KDTQEILDLI  NEGNSLLDDD  KDFGAFFEKS  TSFEDLPSIQ  LRNNPNNPFG60
NIEKKLSQKG  PNDIRFDFMD  GCRIWLPEPA  HWHVRLRDTH  TNTVIFDDAL  FSSGLLQTEK120
RYFFPLELTI  WKNQEEIFSH  VFSLENKKIL  VSMHLGALGD  HIAWIEHVSA  FSKIHNCRID180
CCVSPALIPL  FEKEYPHITF  ITNKELQKEN  DYYAHYKVMI  FANDLERKYQ  PNDYRQSGLV240
HTAPYILGLP  PIERKPHITL  ENNDRPLEEP  YICIATQASG  LYKYWLNPHG  WPNIIQFLQK300
QGYRIVCIDQ  SKGKGQENIW  NMLPKDVIDE  TGDKPLTERA  RWLKHADFFI  GLSSGLSWLA360
WTVNTPVVMI  SGFTEPFNEF  FTPYRVINRH  VCTGCANDTS  QLLDRNDPLF  CPYFKGTDRM420
FECSYMITPE  HVISTLRPLL  KK442

Predicted 3D structure by AlphaFold2 with pLDDT = 86.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MISKKKSLSE  KDTQEILDLI  NEGNSLLDDD  KDFGAFFEKS  TSFEDLPSIQ  LRNNPNNPFG60
NIEKKLSQKG  PNDIRFDFMD  GCRIWLPEPA  HWHVRLRDTH  TNTVIFDDAL  FSSGLLQTEK120
RYFFPLELTI  WKNQEEIFSH  VFSLENKKIL  VSMHLGALGD  HIAWIEHVSA  FSKIHNCRID180
CCVSPALIPL  FEKEYPHITF  ITNKELQKEN  DYYAHYKVMI  FANDLERKYQ  PNDYRQSGLV240
HTAPYILGLP  PIERKPHITL  ENNDRPLEEP  YICIATQASG  LYKYWLNPHG  WPNIIQFLQK300
QGYRIVCIDQ  SKGKGQENIW  NMLPKDVIDE  TGDKPLTERA  RWLKHADFFI  GLSSGLSWLA360
WTVNTPVVMI  SGFTEPFNEF  FTPYRVINRH  VCTGCANDTS  QLLDRNDPLF  CPYFKGTDRM420
FECSYMITPE  HVISTLRPLL  KK442

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(66-436)

MISKKKSLSE  KDTQEILDLI  NEGNSLLDDD  KDFGAFFEKS  TSFEDLPSIQ  LRNNPNNPFG60
NIEKKLSQKG  PNDIRFDFMD  GCRIWLPEPA  HWHVRLRDTH  TNTVIFDDAL  FSSGLLQTEK120
RYFFPLELTI  WKNQEEIFSH  VFSLENKKIL  VSMHLGALGD  HIAWIEHVSA  FSKIHNCRID180
CCVSPALIPL  FEKEYPHITF  ITNKELQKEN  DYYAHYKVMI  FANDLERKYQ  PNDYRQSGLV240
HTAPYILGLP  PIERKPHITL  ENNDRPLEEP  YICIATQASG  LYKYWLNPHG  WPNIIQFLQK300
QGYRIVCIDQ  SKGKGQENIW  NMLPKDVIDE  TGDKPLTERA  RWLKHADFFI  GLSSGLSWLA360
WTVNTPVVMI  SGFTEPFNEF  FTPYRVINRH  VCTGCANDTS  QLLDRNDPLF  CPYFKGTDRM420
FECSYMITPE  HVISTLRPLL  KK442

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help