CAZyme3D

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Entry ID

Information for CAZyme ID: QCX17614.1

Basic Information

GenBank IDQCX17614.1
FamilyCBM70, PL8_1
Sequence Length1178
UniProt IDS4FXR6(100,100)Download
Average pLDDT?82.59
CAZy50 ID8309
CAZy50 RepYes, QCX17614.1
Structure ClusterSC_CBM70_clus4, SC_PL8_clus45
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1351
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus faecalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKSKKVNLL  LISTLLLSIN  VNPQAISALE  KTISSDNPVD  HLVESTETSS  TDTLIEESQS60
QDEGLTNILP  EEDEAIEQEI  AVVADEETMD  SVEPAVTEEV  KEVTEDLADK  KEQEALLSHN120
LITNGDFSMV  KEQQGLWTGK  EPQNWGLWIP  SDIATTDYTA  EVNTDNQLVL  SSLKEEFRAA180
VNQKVTIDPQ  KNYQLSFNVK  TEELSNIARI  RINEQNEQGQ  TNLWYSKSIK  GTNDWQTIVQ240
DFTPNEETSF  ITMEIFFEKG  TGTLYFDDIS  FTEKQEDEAT  TDERLEEEIQ  MHTHSIYLPW300
RSKYVYEVTD  TTIANVQNEL  IYPLVPGETT  VKIYDEDHLL  VREIPLAITE  FEANKYSEML360
QQWNNSIAGN  SYYDSSNVAM  VTQNNQLDSA  VADILANYSL  EENSHTLWKD  IKEYDSSANI420
TTSYRRVETI  AKQVTQPASK  YYQDPTAIRV  AKNTMAWMYT  YAYNENLAIK  GNWWDYEIGA480
PRAINNALSL  MNNYFSIEEI  VKYTEPINYF  IPDPYNFRVT  IGNPFKALGG  NLVDMGRVKI540
ISAALREEDE  VLNEAVESIE  QVFDYASSGQ  SGFFEDGSYI  DHDNVALTGA  YGNVLIDGLS600
QLFPVVIESG  LLDESKLGNL  YRFIDNSFLP  LIYNGEMMDM  TRGRAISRQQ  LQSHAAGGEA660
IRGILRVANS  SDTDQKNRLN  ELLKTFVTEN  TYYDIYNSLI  SYKDIYLMDN  LLQDTTISTV720
ELPSRLSIFN  KMDKVSYQNM  ETKFGFAISM  YSDETQNYEY  MNQENAYGWY  TSDGAVYLYN780
DDLSHYNDNY  WATVNPYHIP  GTTIIPGERE  VGSGMVTLPS  SFVGGTKLDE  LTASVAMEFS840
NWNSTLQANK  SWFILNDKVV  FLGSNIQQSG  DTSAITTIEN  RKNNQDTSYT  VLVNGDEYQV900
KDGQKEISDV  RSLLLKSSNN  QDMNIGYTFL  EDTDLTYLNE  TNQGSWQEIN  ASQSDQIYQN960
NFSTFYQTHD  EGNDSYAYVM  YPNISEDKLA  ATEKDQSIEV  IQNDETAQAI  YDKELNSWGI1020
VLYEDQGFKV  DENLTVTKQG  IYSIKKEKNQ  YSLSYYNPSD  EIYPEGTIVS  DLTQEVSKEA1080
TAEDMSTIVT  LLISQTGDTG  GDKDKDEDKK  LDEGNGSNNS  SGTGSGSNTN  GDSGTSNVSD1140
KKSLPQTGEL  LMNPLVQIVG  ISLVIVAGVL  NYRRKKIK1178

Predicted 3D structure by AlphaFold2 with pLDDT = 82.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKSKKVNLL  LISTLLLSIN  VNPQAISALE  KTISSDNPVD  HLVESTETSS  TDTLIEESQS60
QDEGLTNILP  EEDEAIEQEI  AVVADEETMD  SVEPAVTEEV  KEVTEDLADK  KEQEALLSHN120
LITNGDFSMV  KEQQGLWTGK  EPQNWGLWIP  SDIATTDYTA  EVNTDNQLVL  SSLKEEFRAA180
VNQKVTIDPQ  KNYQLSFNVK  TEELSNIARI  RINEQNEQGQ  TNLWYSKSIK  GTNDWQTIVQ240
DFTPNEETSF  ITMEIFFEKG  TGTLYFDDIS  FTEKQEDEAT  TDERLEEEIQ  MHTHSIYLPW300
RSKYVYEVTD  TTIANVQNEL  IYPLVPGETT  VKIYDEDHLL  VREIPLAITE  FEANKYSEML360
QQWNNSIAGN  SYYDSSNVAM  VTQNNQLDSA  VADILANYSL  EENSHTLWKD  IKEYDSSANI420
TTSYRRVETI  AKQVTQPASK  YYQDPTAIRV  AKNTMAWMYT  YAYNENLAIK  GNWWDYEIGA480
PRAINNALSL  MNNYFSIEEI  VKYTEPINYF  IPDPYNFRVT  IGNPFKALGG  NLVDMGRVKI540
ISAALREEDE  VLNEAVESIE  QVFDYASSGQ  SGFFEDGSYI  DHDNVALTGA  YGNVLIDGLS600
QLFPVVIESG  LLDESKLGNL  YRFIDNSFLP  LIYNGEMMDM  TRGRAISRQQ  LQSHAAGGEA660
IRGILRVANS  SDTDQKNRLN  ELLKTFVTEN  TYYDIYNSLI  SYKDIYLMDN  LLQDTTISTV720
ELPSRLSIFN  KMDKVSYQNM  ETKFGFAISM  YSDETQNYEY  MNQENAYGWY  TSDGAVYLYN780
DDLSHYNDNY  WATVNPYHIP  GTTIIPGERE  VGSGMVTLPS  SFVGGTKLDE  LTASVAMEFS840
NWNSTLQANK  SWFILNDKVV  FLGSNIQQSG  DTSAITTIEN  RKNNQDTSYT  VLVNGDEYQV900
KDGQKEISDV  RSLLLKSSNN  QDMNIGYTFL  EDTDLTYLNE  TNQGSWQEIN  ASQSDQIYQN960
NFSTFYQTHD  EGNDSYAYVM  YPNISEDKLA  ATEKDQSIEV  IQNDETAQAI  YDKELNSWGI1020
VLYEDQGFKV  DENLTVTKQG  IYSIKKEKNQ  YSLSYYNPSD  EIYPEGTIVS  DLTQEVSKEA1080
TAEDMSTIVT  LLISQTGDTG  GDKDKDEDKK  LDEGNGSNNS  SGTGSGSNTN  GDSGTSNVSD1140
KKSLPQTGEL  LMNPLVQIVG  ISLVIVAGVL  NYRRKKIK1178

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM70(120-274)+PL8_1(728-985)

MKKSKKVNLL  LISTLLLSIN  VNPQAISALE  KTISSDNPVD  HLVESTETSS  TDTLIEESQS60
QDEGLTNILP  EEDEAIEQEI  AVVADEETMD  SVEPAVTEEV  KEVTEDLADK  KEQEALLSHN120
LITNGDFSMV  KEQQGLWTGK  EPQNWGLWIP  SDIATTDYTA  EVNTDNQLVL  SSLKEEFRAA180
VNQKVTIDPQ  KNYQLSFNVK  TEELSNIARI  RINEQNEQGQ  TNLWYSKSIK  GTNDWQTIVQ240
DFTPNEETSF  ITMEIFFEKG  TGTLYFDDIS  FTEKQEDEAT  TDERLEEEIQ  MHTHSIYLPW300
RSKYVYEVTD  TTIANVQNEL  IYPLVPGETT  VKIYDEDHLL  VREIPLAITE  FEANKYSEML360
QQWNNSIAGN  SYYDSSNVAM  VTQNNQLDSA  VADILANYSL  EENSHTLWKD  IKEYDSSANI420
TTSYRRVETI  AKQVTQPASK  YYQDPTAIRV  AKNTMAWMYT  YAYNENLAIK  GNWWDYEIGA480
PRAINNALSL  MNNYFSIEEI  VKYTEPINYF  IPDPYNFRVT  IGNPFKALGG  NLVDMGRVKI540
ISAALREEDE  VLNEAVESIE  QVFDYASSGQ  SGFFEDGSYI  DHDNVALTGA  YGNVLIDGLS600
QLFPVVIESG  LLDESKLGNL  YRFIDNSFLP  LIYNGEMMDM  TRGRAISRQQ  LQSHAAGGEA660
IRGILRVANS  SDTDQKNRLN  ELLKTFVTEN  TYYDIYNSLI  SYKDIYLMDN  LLQDTTISTV720
ELPSRLSIFN  KMDKVSYQNM  ETKFGFAISM  YSDETQNYEY  MNQENAYGWY  TSDGAVYLYN780
DDLSHYNDNY  WATVNPYHIP  GTTIIPGERE  VGSGMVTLPS  SFVGGTKLDE  LTASVAMEFS840
NWNSTLQANK  SWFILNDKVV  FLGSNIQQSG  DTSAITTIEN  RKNNQDTSYT  VLVNGDEYQV900
KDGQKEISDV  RSLLLKSSNN  QDMNIGYTFL  EDTDLTYLNE  TNQGSWQEIN  ASQSDQIYQN960
NFSTFYQTHD  EGNDSYAYVM  YPNISEDKLA  ATEKDQSIEV  IQNDETAQAI  YDKELNSWGI1020
VLYEDQGFKV  DENLTVTKQG  IYSIKKEKNQ  YSLSYYNPSD  EIYPEGTIVS  DLTQEVSKEA1080
TAEDMSTIVT  LLISQTGDTG  GDKDKDEDKK  LDEGNGSNNS  SGTGSGSNTN  GDSGTSNVSD1140
KKSLPQTGEL  LMNPLVQIVG  ISLVIVAGVL  NYRRKKIK1178

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help