CAZyme3D

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Entry ID

Information for CAZyme ID: QCW02594.1

Basic Information

GenBank IDQCW02594.1
FamilyGT4
Sequence Length364
UniProt IDA0A4V1IET3(100,100)Download
Average pLDDT?90.77
CAZy50 ID123461
CAZy50 RepYes, QCW02594.1
Structure ClusterSC_GT4_clus139
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69527
KingdomArchaea
PhylumEuryarchaeota
ClassHalobacteria
OrderNatrialbales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema pallidum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNVIEALQEE  HEITILSVDE  PDFGELNEYY  DTSVTNVDVH  LIDGISALSH  RLPNNRFGKL60
KMSLLESYIL  DNELEEEYDL  LFSTYNELHV  PCKSIQYIHF  PYSDRSVHPN  ADEFSSVIYS120
TYDWFCDKAS  PNINCSHKDT  KYLSNSDWTG  SKVKKALGTN  TKTIYPPVDS  SDFSPQNWED180
RENGFVTVGR  LSPEKNILRN  IDIVANLYEQ  GKDIHYHIIG  PTMDRFTLPW  TESYREKVIS240
KCEKYDFVHL  EGEVDREKLI  ELITTHKYGL  HGMNYEHFGI  AVAELIAGGT  IPFVPQGGGQ300
QEVVGDCERV  MYNSTNDAVS  KISSVLENER  LQETLRSELP  DIEYRFGQSR  FQDEIRQVTN360
EVIL364

Predicted 3D structure by AlphaFold2 with pLDDT = 90.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNVIEALQEE  HEITILSVDE  PDFGELNEYY  DTSVTNVDVH  LIDGISALSH  RLPNNRFGKL60
KMSLLESYIL  DNELEEEYDL  LFSTYNELHV  PCKSIQYIHF  PYSDRSVHPN  ADEFSSVIYS120
TYDWFCDKAS  PNINCSHKDT  KYLSNSDWTG  SKVKKALGTN  TKTIYPPVDS  SDFSPQNWED180
RENGFVTVGR  LSPEKNILRN  IDIVANLYEQ  GKDIHYHIIG  PTMDRFTLPW  TESYREKVIS240
KCEKYDFVHL  EGEVDREKLI  ELITTHKYGL  HGMNYEHFGI  AVAELIAGGT  IPFVPQGGGQ300
QEVVGDCERV  MYNSTNDAVS  KISSVLENER  LQETLRSELP  DIEYRFGQSR  FQDEIRQVTN360
EVIL364

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(179-334)

MNVIEALQEE  HEITILSVDE  PDFGELNEYY  DTSVTNVDVH  LIDGISALSH  RLPNNRFGKL60
KMSLLESYIL  DNELEEEYDL  LFSTYNELHV  PCKSIQYIHF  PYSDRSVHPN  ADEFSSVIYS120
TYDWFCDKAS  PNINCSHKDT  KYLSNSDWTG  SKVKKALGTN  TKTIYPPVDS  SDFSPQNWED180
RENGFVTVGR  LSPEKNILRN  IDIVANLYEQ  GKDIHYHIIG  PTMDRFTLPW  TESYREKVIS240
KCEKYDFVHL  EGEVDREKLI  ELITTHKYGL  HGMNYEHFGI  AVAELIAGGT  IPFVPQGGGQ300
QEVVGDCERV  MYNSTNDAVS  KISSVLENER  LQETLRSELP  DIEYRFGQSR  FQDEIRQVTN360
EVIL364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help