CAZyme3D

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Entry ID

Information for CAZyme ID: QCE01877.1

Basic Information

GenBank IDQCE01877.1
FamilyGH36
Sequence Length1214
UniProt IDA0A4D6MPM3(100,100)Download
Average pLDDT?86.10
CAZy50 ID7590
CAZy50 RepYes, QCE01877.1
Structure ClusterSC_GH36_clus29
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3917
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderFabales
FamilyFabaceae
GenusVigna
SpeciesVigna unguiculata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTVGAGISVA  DGNLMVLGKK  VLSHVHDNVV  VNPACGGALL  NGAFIGVESH  QKGSRTVFPI60
GKLEGLRFMC  VFRFKMWWMT  QRMGTCGKEV  PFETQFLLVE  AQSGSDIDAG  EGQTAATYAV120
FLPLLEGDFR  AVLQGNDQNE  IEICVESGCP  AVEDFDGTHL  VYIGAGSDPY  EVITNSVKAV180
EKHLHTFAHR  ERKKMPDILN  WFGWCTWDAF  YTNVTSENVK  QGLQSFEKGG  IPAKFVIIDD240
GWQSVDMDPN  GTEWKSDHAA  NFANRLTNIK  ENHKFQKDGK  EGERVEDPAL  GLRHITNEIK300
QEHDIKYVYV  WHAITGYWGG  VKPGVTGMEH  YDSKMAFPVS  SPGVESNQPD  EALATIAING360
LGLVNPEKVF  HFYDELHSYL  ASAGIDGVKV  DVQNILETLG  AGHGGRVKLA  RKYHQALEAS420
ISRNFPDNGI  ICCMSHNTDG  LYSAKRSAVI  RASDDFWPRD  PASHTIHIAS  VAYNTIFLGE480
FMQPDWDMFH  SLHPMAEYHA  AARSVGGCPI  YVSDKPGHHD  FDLLKKLVLP  DGSILRAKLP540
GRPTKDCLFT  DPARDGKSLL  KIWNMNDFSG  VVAVFNCQGA  GWCKVDKKNL  IHDDNPGTVT600
GFIRAKDVDY  LSRITDDEWT  GDAVIYSHLG  GEVVYLPKDA  TLPVTLKSKE  YEVFTIVPVK660
DLNNDIKFSP  IGLIKMFNSG  GAVKEFFSLG  SNESTNVAMK  VRGCGQFGAY  SSVRPKLITV720
DSEEVEFKYE  EETGLVTVEL  RVPEKELYQW  IAREREMFGR  GTVWSVLRRG  KEAIGIPKLR780
GMTTSFSSST  QAPPLKFLTP  PVATHYIHAF  RSQLLPKGPH  VHVSYTRNFS  KVVAAGAQHK840
EEGLKLLVTG  GSHAQKVVGI  WLFGSAAWVF  SMVVLGGLTR  LTRSGLSMTD  WKFTGTLPPL900
SDEEWLEEFD  KYKESPEYKR  VNRGMKIEEF  KFIYWMEYAH  RMWGRALGVM  FALPYSYFLH960
KGYITLRLGL  RLSALFGLGA  GQGLIGWWMV  KSGLEEPPSE  YSQPRVSPYR  LAAHLTSAFA1020
IYCGLFWTAL  SVVLPEPPTE  SLTWVRGAAK  VRRFALPVSV  LVGLTAVSGA  FVAGNDAGHA1080
FNTFPKMGDT  WIPEDIFEMK  PLIRNFFENT  STVQLDHRIL  ATATLVSVGI  LWWSTRKLDL1140
HPAIRSVIGG  TVGMAALQVT  LGVSTLLSYV  PVSLGTAHQA  GALTLLTFML  LLNHTVRRPS1200
LSLLKSLPQV  VKAH1214

Predicted 3D structure by AlphaFold2 with pLDDT = 86.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTVGAGISVA  DGNLMVLGKK  VLSHVHDNVV  VNPACGGALL  NGAFIGVESH  QKGSRTVFPI60
GKLEGLRFMC  VFRFKMWWMT  QRMGTCGKEV  PFETQFLLVE  AQSGSDIDAG  EGQTAATYAV120
FLPLLEGDFR  AVLQGNDQNE  IEICVESGCP  AVEDFDGTHL  VYIGAGSDPY  EVITNSVKAV180
EKHLHTFAHR  ERKKMPDILN  WFGWCTWDAF  YTNVTSENVK  QGLQSFEKGG  IPAKFVIIDD240
GWQSVDMDPN  GTEWKSDHAA  NFANRLTNIK  ENHKFQKDGK  EGERVEDPAL  GLRHITNEIK300
QEHDIKYVYV  WHAITGYWGG  VKPGVTGMEH  YDSKMAFPVS  SPGVESNQPD  EALATIAING360
LGLVNPEKVF  HFYDELHSYL  ASAGIDGVKV  DVQNILETLG  AGHGGRVKLA  RKYHQALEAS420
ISRNFPDNGI  ICCMSHNTDG  LYSAKRSAVI  RASDDFWPRD  PASHTIHIAS  VAYNTIFLGE480
FMQPDWDMFH  SLHPMAEYHA  AARSVGGCPI  YVSDKPGHHD  FDLLKKLVLP  DGSILRAKLP540
GRPTKDCLFT  DPARDGKSLL  KIWNMNDFSG  VVAVFNCQGA  GWCKVDKKNL  IHDDNPGTVT600
GFIRAKDVDY  LSRITDDEWT  GDAVIYSHLG  GEVVYLPKDA  TLPVTLKSKE  YEVFTIVPVK660
DLNNDIKFSP  IGLIKMFNSG  GAVKEFFSLG  SNESTNVAMK  VRGCGQFGAY  SSVRPKLITV720
DSEEVEFKYE  EETGLVTVEL  RVPEKELYQW  IAREREMFGR  GTVWSVLRRG  KEAIGIPKLR780
GMTTSFSSST  QAPPLKFLTP  PVATHYIHAF  RSQLLPKGPH  VHVSYTRNFS  KVVAAGAQHK840
EEGLKLLVTG  GSHAQKVVGI  WLFGSAAWVF  SMVVLGGLTR  LTRSGLSMTD  WKFTGTLPPL900
SDEEWLEEFD  KYKESPEYKR  VNRGMKIEEF  KFIYWMEYAH  RMWGRALGVM  FALPYSYFLH960
KGYITLRLGL  RLSALFGLGA  GQGLIGWWMV  KSGLEEPPSE  YSQPRVSPYR  LAAHLTSAFA1020
IYCGLFWTAL  SVVLPEPPTE  SLTWVRGAAK  VRRFALPVSV  LVGLTAVSGA  FVAGNDAGHA1080
FNTFPKMGDT  WIPEDIFEMK  PLIRNFFENT  STVQLDHRIL  ATATLVSVGI  LWWSTRKLDL1140
HPAIRSVIGG  TVGMAALQVT  LGVSTLLSYV  PVSLGTAHQA  GALTLLTFML  LLNHTVRRPS1200
LSLLKSLPQV  VKAH1214

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MTVGAGISVA  DGNLMVLGKK  VLSHVHDNVV  VNPACGGALL  NGAFIGVESH  QKGSRTVFPI60
GKLEGLRFMC  VFRFKMWWMT  QRMGTCGKEV  PFETQFLLVE  AQSGSDIDAG  EGQTAATYAV120
FLPLLEGDFR  AVLQGNDQNE  IEICVESGCP  AVEDFDGTHL  VYIGAGSDPY  EVITNSVKAV180
EKHLHTFAHR  ERKKMPDILN  WFGWCTWDAF  YTNVTSENVK  QGLQSFEKGG  IPAKFVIIDD240
GWQSVDMDPN  GTEWKSDHAA  NFANRLTNIK  ENHKFQKDGK  EGERVEDPAL  GLRHITNEIK300
QEHDIKYVYV  WHAITGYWGG  VKPGVTGMEH  YDSKMAFPVS  SPGVESNQPD  EALATIAING360
LGLVNPEKVF  HFYDELHSYL  ASAGIDGVKV  DVQNILETLG  AGHGGRVKLA  RKYHQALEAS420
ISRNFPDNGI  ICCMSHNTDG  LYSAKRSAVI  RASDDFWPRD  PASHTIHIAS  VAYNTIFLGE480
FMQPDWDMFH  SLHPMAEYHA  AARSVGGCPI  YVSDKPGHHD  FDLLKKLVLP  DGSILRAKLP540
GRPTKDCLFT  DPARDGKSLL  KIWNMNDFSG  VVAVFNCQGA  GWCKVDKKNL  IHDDNPGTVT600
GFIRAKDVDY  LSRITDDEWT  GDAVIYSHLG  GEVVYLPKDA  TLPVTLKSKE  YEVFTIVPVK660
DLNNDIKFSP  IGLIKMFNSG  GAVKEFFSLG  SNESTNVAMK  VRGCGQFGAY  SSVRPKLITV720
DSEEVEFKYE  EETGLVTVEL  RVPEKELYQW  IAREREMFGR  GTVWSVLRRG  KEAIGIPKLR780
GMTTSFSSST  QAPPLKFLTP  PVATHYIHAF  RSQLLPKGPH  VHVSYTRNFS  KVVAAGAQHK840
EEGLKLLVTG  GSHAQKVVGI  WLFGSAAWVF  SMVVLGGLTR  LTRSGLSMTD  WKFTGTLPPL900
SDEEWLEEFD  KYKESPEYKR  VNRGMKIEEF  KFIYWMEYAH  RMWGRALGVM  FALPYSYFLH960
KGYITLRLGL  RLSALFGLGA  GQGLIGWWMV  KSGLEEPPSE  YSQPRVSPYR  LAAHLTSAFA1020
IYCGLFWTAL  SVVLPEPPTE  SLTWVRGAAK  VRRFALPVSV  LVGLTAVSGA  FVAGNDAGHA1080
FNTFPKMGDT  WIPEDIFEMK  PLIRNFFENT  STVQLDHRIL  ATATLVSVGI  LWWSTRKLDL1140
HPAIRSVIGG  TVGMAALQVT  LGVSTLLSYV  PVSLGTAHQA  GALTLLTFML  LLNHTVRRPS1200
LSLLKSLPQV  VKAH1214

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help