CAZyme3D

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Entry ID

Information for CAZyme ID: QCD82017.1

Basic Information

GenBank IDQCD82017.1
FamilyGT77
Sequence Length1933
UniProt IDA0A4D6KZH5(100,100)Download
Average pLDDT?49.07
CAZy50 ID1685
CAZy50 RepYes, QCD82017.1
Structure ClusterSC_GT77_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3917
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderFabales
FamilyFabaceae
GenusVigna
SpeciesVigna unguiculata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDSFQQHHGY  MRPPQPPPPP  PHAADPHHHP  HHFHQIPPPP  PQAPWLSSQF  QYHPSQTPSP60
PPQWQQPPPP  PPPPPPSNAY  SYHPSPFPPP  PPRSHAPPHQ  FTPHSHISQP  YPQEWGNPNL120
PPNQGYPAHN  NEEDWAAKAR  AWAAKAAMES  QHPQTHFSPA  GRLHEQNHYH  DQYQQSIDSH180
YTDVQNQSHS  TSSYQQFSYL  DTSAQRISGQ  SQDAVPVSLE  TSYAQDGHSY  SARDGTSIRD240
SNVSFEQGNM  PANPSVHQQE  VPSSYSSVAG  KEAADQIQQS  YSVFPLSSSS  SQERHVQPSM300
HAPPFASGSH  SVDSAISLAD  QPLDFAPRFN  RDNDLQMQST  YSHHDSSTSM  NNWAAQVAPG360
VGYPPILASG  PQLDPSISTP  GHVAPPFGRF  PGPSLPSTIP  PSGAPFTLST  GTTIHPTAAF420
SADAYGVSII  AAPAENLKEE  AAFVNDGIDK  PYTRGDEADS  KSIDSSRSAE  DEEDEEDQVE480
VARTAAINQE  IKRVLTEVLL  KVTDELFDEI  ATKVLAEDDL  TAEVGHKVVT  SNLKAPASPP540
SVTVPKASAK  VLVPVKERVV  ENDGTSEKSN  SSSPGDVLGL  GNYGSDADDE  DNEIESSSVP600
TPAKDAAYQS  GIKQPLPDTH  DVSVNGISQL  HERSRYETNF  VNAQVKAMSI  PSNDSASDQL660
HDDKVTRVSD  LSHSSKVVSE  DLRDNGLDAI  QRSHDRFNGF  SSKDTSGIPR  SELPGKNIGV720
EKATDDHSGR  ESRRKSEKNE  RPDRNTSEKD  FVKELNSSKT  RIDEKGHENH  KRKDERNHKR780
EKADYGSEAK  ERVKEHHFRH  GEKAKESDSR  KRSSHVDVKD  DKREAEKSHR  GSTTDDTSRK840
REHTKDKGEH  KSRQKDASNP  DRHRRRRSSS  VSSRGRTNRD  RVDHAGNSSE  GSDVSKRKLH900
SRKRDLSPSP  VRSKRSTVVS  FLDNFRGLLI  ASVLSAGILP  ILLLILPGEG  GQDPDHLFGG960
RDEPWKQRRL  SFHRGGSFTK  TSIRRSRAKH  GSQVELWSVW  LSGFVFITLS  LYATQRLPSL1020
KDHSRASKDV  ISDSTSITIF  TAPKPFKGST  GTKQTLAVRS  WLALSPYVTV  VLYSQDPSVA1080
SFADVFDSRV  LADTNIDFTF  LGTPFFHSMI  AKSSSYISDI  SVIVDPETII  LSGFISTLNH1140
VYQLDHDWLL  VASPQNVSSF  PFHLDESGKH  WQSSNGKRMK  IQQLQKILQQ  NWQGKRCYTR1200
MLMVWNSKDV  PLHDGVLPPF  LYGKGVHNNW  VIHEAMSSEF  RFVFDASFTI  TSFYLTTQGN1260
SSALDVENRN  WEYIGNSHVG  ANYGSFFYSE  DNSNLVKLLK  CNKQYIMVDT  KKNAVYSIGH1320
QGAINLMKEK  YFPSWLKENT  MYCVDRQKPQ  TASLDCCMKD  QMKISATLEL  PFSLESLLSI1380
TADKNKTVIV  TVAGYSYKDM  LMSWVCRLRE  LFVENFVVCA  LDQETYQFSI  LQGIPVFTDP1440
TAPSNISFDD  CHFGTKCFQR  VTKVKSRIVL  KILKLGYNVL  LSDVDVYWFK  NPVPLLHSFG1500
PAVLAAQSDE  YKKQGPINLP  RRLNSGFYYA  HSDTQTIAAI  EKVVRHAETS  GLSEQPSFYD1560
TLCGEGGSNR  VGDNQCVEPE  TNLTVHFLDR  DLFPNGAYQE  LWWEIDVKAA  CLKKGSYIIH1620
NNWISGRLKK  LERQVLSGLW  EYDPGTRMCL  WSWHGTAMLK  RVVHSLGRVE  HRDKGSRRKN1680
HQSQRVPSPE  LYSQSRDFVV  RITHAGGHQE  LYRHAVPASK  LMTKYPGMCV  ARPEVFRVPH1740
QSVLWREEIL  VPGHKYILIS  FKDVEKLKRK  ISEEEKSKEG  DGVVVETKTR  SPKERNGVAG1800
HETLDTIING  GNSHRENGKM  KEANGVAGQG  LEKRTSVSPR  GEGSNSVAKE  GMGLGVEKVE1860
SNVDGCLGEG  GVEDCFYSAK  DFYVRREKSI  TPRPSRRKGI  KGKKPFVAPL  PKPRPYRSLA1920
WQPSLPTVRE  LSP1933

Predicted 3D structure by AlphaFold2 with pLDDT = 49.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDSFQQHHGY  MRPPQPPPPP  PHAADPHHHP  HHFHQIPPPP  PQAPWLSSQF  QYHPSQTPSP60
PPQWQQPPPP  PPPPPPSNAY  SYHPSPFPPP  PPRSHAPPHQ  FTPHSHISQP  YPQEWGNPNL120
PPNQGYPAHN  NEEDWAAKAR  AWAAKAAMES  QHPQTHFSPA  GRLHEQNHYH  DQYQQSIDSH180
YTDVQNQSHS  TSSYQQFSYL  DTSAQRISGQ  SQDAVPVSLE  TSYAQDGHSY  SARDGTSIRD240
SNVSFEQGNM  PANPSVHQQE  VPSSYSSVAG  KEAADQIQQS  YSVFPLSSSS  SQERHVQPSM300
HAPPFASGSH  SVDSAISLAD  QPLDFAPRFN  RDNDLQMQST  YSHHDSSTSM  NNWAAQVAPG360
VGYPPILASG  PQLDPSISTP  GHVAPPFGRF  PGPSLPSTIP  PSGAPFTLST  GTTIHPTAAF420
SADAYGVSII  AAPAENLKEE  AAFVNDGIDK  PYTRGDEADS  KSIDSSRSAE  DEEDEEDQVE480
VARTAAINQE  IKRVLTEVLL  KVTDELFDEI  ATKVLAEDDL  TAEVGHKVVT  SNLKAPASPP540
SVTVPKASAK  VLVPVKERVV  ENDGTSEKSN  SSSPGDVLGL  GNYGSDADDE  DNEIESSSVP600
TPAKDAAYQS  GIKQPLPDTH  DVSVNGISQL  HERSRYETNF  VNAQVKAMSI  PSNDSASDQL660
HDDKVTRVSD  LSHSSKVVSE  DLRDNGLDAI  QRSHDRFNGF  SSKDTSGIPR  SELPGKNIGV720
EKATDDHSGR  ESRRKSEKNE  RPDRNTSEKD  FVKELNSSKT  RIDEKGHENH  KRKDERNHKR780
EKADYGSEAK  ERVKEHHFRH  GEKAKESDSR  KRSSHVDVKD  DKREAEKSHR  GSTTDDTSRK840
REHTKDKGEH  KSRQKDASNP  DRHRRRRSSS  VSSRGRTNRD  RVDHAGNSSE  GSDVSKRKLH900
SRKRDLSPSP  VRSKRSTVVS  FLDNFRGLLI  ASVLSAGILP  ILLLILPGEG  GQDPDHLFGG960
RDEPWKQRRL  SFHRGGSFTK  TSIRRSRAKH  GSQVELWSVW  LSGFVFITLS  LYATQRLPSL1020
KDHSRASKDV  ISDSTSITIF  TAPKPFKGST  GTKQTLAVRS  WLALSPYVTV  VLYSQDPSVA1080
SFADVFDSRV  LADTNIDFTF  LGTPFFHSMI  AKSSSYISDI  SVIVDPETII  LSGFISTLNH1140
VYQLDHDWLL  VASPQNVSSF  PFHLDESGKH  WQSSNGKRMK  IQQLQKILQQ  NWQGKRCYTR1200
MLMVWNSKDV  PLHDGVLPPF  LYGKGVHNNW  VIHEAMSSEF  RFVFDASFTI  TSFYLTTQGN1260
SSALDVENRN  WEYIGNSHVG  ANYGSFFYSE  DNSNLVKLLK  CNKQYIMVDT  KKNAVYSIGH1320
QGAINLMKEK  YFPSWLKENT  MYCVDRQKPQ  TASLDCCMKD  QMKISATLEL  PFSLESLLSI1380
TADKNKTVIV  TVAGYSYKDM  LMSWVCRLRE  LFVENFVVCA  LDQETYQFSI  LQGIPVFTDP1440
TAPSNISFDD  CHFGTKCFQR  VTKVKSRIVL  KILKLGYNVL  LSDVDVYWFK  NPVPLLHSFG1500
PAVLAAQSDE  YKKQGPINLP  RRLNSGFYYA  HSDTQTIAAI  EKVVRHAETS  GLSEQPSFYD1560
TLCGEGGSNR  VGDNQCVEPE  TNLTVHFLDR  DLFPNGAYQE  LWWEIDVKAA  CLKKGSYIIH1620
NNWISGRLKK  LERQVLSGLW  EYDPGTRMCL  WSWHGTAMLK  RVVHSLGRVE  HRDKGSRRKN1680
HQSQRVPSPE  LYSQSRDFVV  RITHAGGHQE  LYRHAVPASK  LMTKYPGMCV  ARPEVFRVPH1740
QSVLWREEIL  VPGHKYILIS  FKDVEKLKRK  ISEEEKSKEG  DGVVVETKTR  SPKERNGVAG1800
HETLDTIING  GNSHRENGKM  KEANGVAGQG  LEKRTSVSPR  GEGSNSVAKE  GMGLGVEKVE1860
SNVDGCLGEG  GVEDCFYSAK  DFYVRREKSI  TPRPSRRKGI  KGKKPFVAPL  PKPRPYRSLA1920
WQPSLPTVRE  LSP1933

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(1413-1633)

MDSFQQHHGY  MRPPQPPPPP  PHAADPHHHP  HHFHQIPPPP  PQAPWLSSQF  QYHPSQTPSP60
PPQWQQPPPP  PPPPPPSNAY  SYHPSPFPPP  PPRSHAPPHQ  FTPHSHISQP  YPQEWGNPNL120
PPNQGYPAHN  NEEDWAAKAR  AWAAKAAMES  QHPQTHFSPA  GRLHEQNHYH  DQYQQSIDSH180
YTDVQNQSHS  TSSYQQFSYL  DTSAQRISGQ  SQDAVPVSLE  TSYAQDGHSY  SARDGTSIRD240
SNVSFEQGNM  PANPSVHQQE  VPSSYSSVAG  KEAADQIQQS  YSVFPLSSSS  SQERHVQPSM300
HAPPFASGSH  SVDSAISLAD  QPLDFAPRFN  RDNDLQMQST  YSHHDSSTSM  NNWAAQVAPG360
VGYPPILASG  PQLDPSISTP  GHVAPPFGRF  PGPSLPSTIP  PSGAPFTLST  GTTIHPTAAF420
SADAYGVSII  AAPAENLKEE  AAFVNDGIDK  PYTRGDEADS  KSIDSSRSAE  DEEDEEDQVE480
VARTAAINQE  IKRVLTEVLL  KVTDELFDEI  ATKVLAEDDL  TAEVGHKVVT  SNLKAPASPP540
SVTVPKASAK  VLVPVKERVV  ENDGTSEKSN  SSSPGDVLGL  GNYGSDADDE  DNEIESSSVP600
TPAKDAAYQS  GIKQPLPDTH  DVSVNGISQL  HERSRYETNF  VNAQVKAMSI  PSNDSASDQL660
HDDKVTRVSD  LSHSSKVVSE  DLRDNGLDAI  QRSHDRFNGF  SSKDTSGIPR  SELPGKNIGV720
EKATDDHSGR  ESRRKSEKNE  RPDRNTSEKD  FVKELNSSKT  RIDEKGHENH  KRKDERNHKR780
EKADYGSEAK  ERVKEHHFRH  GEKAKESDSR  KRSSHVDVKD  DKREAEKSHR  GSTTDDTSRK840
REHTKDKGEH  KSRQKDASNP  DRHRRRRSSS  VSSRGRTNRD  RVDHAGNSSE  GSDVSKRKLH900
SRKRDLSPSP  VRSKRSTVVS  FLDNFRGLLI  ASVLSAGILP  ILLLILPGEG  GQDPDHLFGG960
RDEPWKQRRL  SFHRGGSFTK  TSIRRSRAKH  GSQVELWSVW  LSGFVFITLS  LYATQRLPSL1020
KDHSRASKDV  ISDSTSITIF  TAPKPFKGST  GTKQTLAVRS  WLALSPYVTV  VLYSQDPSVA1080
SFADVFDSRV  LADTNIDFTF  LGTPFFHSMI  AKSSSYISDI  SVIVDPETII  LSGFISTLNH1140
VYQLDHDWLL  VASPQNVSSF  PFHLDESGKH  WQSSNGKRMK  IQQLQKILQQ  NWQGKRCYTR1200
MLMVWNSKDV  PLHDGVLPPF  LYGKGVHNNW  VIHEAMSSEF  RFVFDASFTI  TSFYLTTQGN1260
SSALDVENRN  WEYIGNSHVG  ANYGSFFYSE  DNSNLVKLLK  CNKQYIMVDT  KKNAVYSIGH1320
QGAINLMKEK  YFPSWLKENT  MYCVDRQKPQ  TASLDCCMKD  QMKISATLEL  PFSLESLLSI1380
TADKNKTVIV  TVAGYSYKDM  LMSWVCRLRE  LFVENFVVCA  LDQETYQFSI  LQGIPVFTDP1440
TAPSNISFDD  CHFGTKCFQR  VTKVKSRIVL  KILKLGYNVL  LSDVDVYWFK  NPVPLLHSFG1500
PAVLAAQSDE  YKKQGPINLP  RRLNSGFYYA  HSDTQTIAAI  EKVVRHAETS  GLSEQPSFYD1560
TLCGEGGSNR  VGDNQCVEPE  TNLTVHFLDR  DLFPNGAYQE  LWWEIDVKAA  CLKKGSYIIH1620
NNWISGRLKK  LERQVLSGLW  EYDPGTRMCL  WSWHGTAMLK  RVVHSLGRVE  HRDKGSRRKN1680
HQSQRVPSPE  LYSQSRDFVV  RITHAGGHQE  LYRHAVPASK  LMTKYPGMCV  ARPEVFRVPH1740
QSVLWREEIL  VPGHKYILIS  FKDVEKLKRK  ISEEEKSKEG  DGVVVETKTR  SPKERNGVAG1800
HETLDTIING  GNSHRENGKM  KEANGVAGQG  LEKRTSVSPR  GEGSNSVAKE  GMGLGVEKVE1860
SNVDGCLGEG  GVEDCFYSAK  DFYVRREKSI  TPRPSRRKGI  KGKKPFVAPL  PKPRPYRSLA1920
WQPSLPTVRE  LSP1933

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help