CAZyme3D

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Entry ID

Information for CAZyme ID: QCC84765.1

Basic Information

GenBank IDQCC84765.1
FamilyGT2
Sequence Length410
UniProt IDA0A4P7UFL1(100,100)Download
Average pLDDT?75.09
CAZy50 ID93544
CAZy50 RepYes, QCC84765.1
Structure ClusterSC_GT2_clus510
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID876
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio desulfuricans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIPRQQPTGC  PAPAARADGL  EFGNPGHYAA  LTCYRKLFLK  AAWIPSSWSC  TTTGLIRMPS60
WQFFVVGRTS  VLRHLRKPLH  RIAWRHVKPP  QYMPQPLPPR  GSKEIPMASV  PQTAERKVPF120
FSVIIPAYNC  VGFLREALQS  LREQTCKDFE  VIIADSRSTD  GTATVASEFP  DVPCSVYNID180
IIGNIAASRN  VAAAHATAPW  LAFLDADDFW  APGKLARVRD  AIGEHPKAIA  FCHAENIFRD240
GQVIGTQSYG  PRGPHLPSSL  LFGGNAFSTA  ATVLRRDIFE  QVGGFDENPS  IITAEDYDLW300
VRTTPFGESV  FLPDVLGCYR  LHGGNSTAKL  KRHLDATEAV  LHKHLTAYQA  RYAWAVYRRM360
FRFTARCALD  MVQHKHWGHA  LEYAVRSLGY  AVRMAASWRP  TLQACPHSPE  410

Predicted 3D structure by AlphaFold2 with pLDDT = 75.09 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIPRQQPTGC  PAPAARADGL  EFGNPGHYAA  LTCYRKLFLK  AAWIPSSWSC  TTTGLIRMPS60
WQFFVVGRTS  VLRHLRKPLH  RIAWRHVKPP  QYMPQPLPPR  GSKEIPMASV  PQTAERKVPF120
FSVIIPAYNC  VGFLREALQS  LREQTCKDFE  VIIADSRSTD  GTATVASEFP  DVPCSVYNID180
IIGNIAASRN  VAAAHATAPW  LAFLDADDFW  APGKLARVRD  AIGEHPKAIA  FCHAENIFRD240
GQVIGTQSYG  PRGPHLPSSL  LFGGNAFSTA  ATVLRRDIFE  QVGGFDENPS  IITAEDYDLW300
VRTTPFGESV  FLPDVLGCYR  LHGGNSTAKL  KRHLDATEAV  LHKHLTAYQA  RYAWAVYRRM360
FRFTARCALD  MVQHKHWGHA  LEYAVRSLGY  AVRMAASWRP  TLQACPHSPE  410

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(122-282)+GT2(202-381)

MIPRQQPTGC  PAPAARADGL  EFGNPGHYAA  LTCYRKLFLK  AAWIPSSWSC  TTTGLIRMPS60
WQFFVVGRTS  VLRHLRKPLH  RIAWRHVKPP  QYMPQPLPPR  GSKEIPMASV  PQTAERKVPF120
FSVIIPAYNC  VGFLREALQS  LREQTCKDFE  VIIADSRSTD  GTATVASEFP  DVPCSVYNID180
IIGNIAASRN  VAAAHATAPW  LAFLDADDFW  APGKLARVRD  AIGEHPKAIA  FCHAENIFRD240
GQVIGTQSYG  PRGPHLPSSL  LFGGNAFSTA  ATVLRRDIFE  QVGGFDENPS  IITAEDYDLW300
VRTTPFGESV  FLPDVLGCYR  LHGGNSTAKL  KRHLDATEAV  LHKHLTAYQA  RYAWAVYRRM360
FRFTARCALD  MVQHKHWGHA  LEYAVRSLGY  AVRMAASWRP  TLQACPHSPE  410

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help