CAZyme3D

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Entry ID

Information for CAZyme ID: QBZ60280.1

Basic Information

GenBank IDQBZ60280.1
FamilyCE2
Sequence Length360
UniProt IDA0A4P7NEJ3(100,100)Download
Average pLDDT?92.40
CAZy50 ID126300
CAZy50 RepYes, QBZ60280.1
Structure ClusterSC_CE2_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID318829
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderMagnaporthales
FamilyPyriculariaceae
GenusPyricularia
SpeciesPyricularia oryzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAPTQLRFLL  HALMAAATVA  AESTRFLGRV  NPATRELTWP  ATGIAVAFDG  TTASIPITSQ60
WGTVAVEMVI  DDGPPIAIPN  VDGPAITTPA  GLPRGRHTMT  VRKKSEAYFG  SLFLGQPTTD120
GELVDLGPRP  KRSIEIIGDS  ISVGYGLEGV  FPCANAADNE  AATKTYGALT  ANNLSADYSI180
VAWSGKGVTR  NYVAPGPDLD  PRMPELWTRW  GAGDEAGSYD  FAAPVDAVVI  NLGTNDFSFD240
PAVRPQLDVD  VFSRAFAAFL  AQVRGAYPSA  VVFLTGSPLL  NDATAERQKS  RHSAVMREAA300
ERSGPDVHFV  EFPTQDASGN  NIGCDYHPSA  RTNQELAVIL  TAAMRSVMGW  DACKRSRFRA360
360

Predicted 3D structure by AlphaFold2 with pLDDT = 92.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAPTQLRFLL  HALMAAATVA  AESTRFLGRV  NPATRELTWP  ATGIAVAFDG  TTASIPITSQ60
WGTVAVEMVI  DDGPPIAIPN  VDGPAITTPA  GLPRGRHTMT  VRKKSEAYFG  SLFLGQPTTD120
GELVDLGPRP  KRSIEIIGDS  ISVGYGLEGV  FPCANAADNE  AATKTYGALT  ANNLSADYSI180
VAWSGKGVTR  NYVAPGPDLD  PRMPELWTRW  GAGDEAGSYD  FAAPVDAVVI  NLGTNDFSFD240
PAVRPQLDVD  VFSRAFAAFL  AQVRGAYPSA  VVFLTGSPLL  NDATAERQKS  RHSAVMREAA300
ERSGPDVHFV  EFPTQDASGN  NIGCDYHPSA  RTNQELAVIL  TAAMRSVMGW  DACKRSRFRA360
360

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(134-343)

MAPTQLRFLL  HALMAAATVA  AESTRFLGRV  NPATRELTWP  ATGIAVAFDG  TTASIPITSQ60
WGTVAVEMVI  DDGPPIAIPN  VDGPAITTPA  GLPRGRHTMT  VRKKSEAYFG  SLFLGQPTTD120
GELVDLGPRP  KRSIEIIGDS  ISVGYGLEGV  FPCANAADNE  AATKTYGALT  ANNLSADYSI180
VAWSGKGVTR  NYVAPGPDLD  PRMPELWTRW  GAGDEAGSYD  FAAPVDAVVI  NLGTNDFSFD240
PAVRPQLDVD  VFSRAFAAFL  AQVRGAYPSA  VVFLTGSPLL  NDATAERQKS  RHSAVMREAA300
ERSGPDVHFV  EFPTQDASGN  NIGCDYHPSA  RTNQELAVIL  TAAMRSVMGW  DACKRSRFRA360
360

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help