CAZyme3D

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Entry ID

Information for CAZyme ID: QBZ53454.1

Basic Information

GenBank IDQBZ53454.1
FamilyAA3_3
Sequence Length663
UniProt IDA0A4P7N107(100,100)Download
Average pLDDT?91.27
CAZy50 ID43387
CAZy50 RepYes, QBZ53454.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID318829
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderMagnaporthales
FamilyPyriculariaceae
GenusPyricularia
SpeciesPyricularia oryzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGLSNKFTDE  VKEVDVIIVG  GGTAGCVVAS  RLAAAAPNLH  VLVVEGGRDN  YKDPLIINPF60
AFIKNQDPSA  KTALFFRAGK  SEDLGGRELV  VPTGGILGGG  SSINFLMYTR  GHRSDFESWN120
TPGWGPDDML  PFLKKARQPT  PPLQPGSQAE  TYHGTGSAAV  HGSTGPIHIS  SGTYRNEELT180
TDFIRAVTSL  GFPETADLQD  LESVDAVSRH  LRFVSPAGDR  SDSAHAYLHP  LLRDGQHPNL240
HVLVEHNVSR  VLFDDDDDKQ  ACGIELVPNP  LFHPQSPPSP  PFTVKSRLNA  VVLSAGALCT300
PSILERSGIG  AAAVLERAGV  PLKVDLPAVG  ENLQDHHMLL  VPFRSAFPPE  VLGNVALLGD360
IADVPRQAEA  LSVCGRRGSN  FIEAAAKLRP  SADEVEALGA  DFREGWERDY  VTRPGRGLVQ420
ICMAGGFPGP  NDEPSCENIA  LSAFTLYPYS  RGSVHITGPS  PTSDEPAFDS  GIFSSSPSSA480
PSLSSPSSSV  SSLSASSSSS  FDVAASCWTY  KKLRDIARRL  DSYRGEVAYA  HPPFPQGSGA540
ALSQLPVDGP  SLAEKCGGPD  KVPKLVYSAE  DDAVLEAYVR  NAVQTTWHTL  GSVRMGPREG600
DDQGGPKGAV  DSSLNVYGVK  GLKVVDLSIV  PENIGGNTNM  TAIAIGEKGA  DILLRELGIL660
KTD663

Predicted 3D structure by AlphaFold2 with pLDDT = 91.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGLSNKFTDE  VKEVDVIIVG  GGTAGCVVAS  RLAAAAPNLH  VLVVEGGRDN  YKDPLIINPF60
AFIKNQDPSA  KTALFFRAGK  SEDLGGRELV  VPTGGILGGG  SSINFLMYTR  GHRSDFESWN120
TPGWGPDDML  PFLKKARQPT  PPLQPGSQAE  TYHGTGSAAV  HGSTGPIHIS  SGTYRNEELT180
TDFIRAVTSL  GFPETADLQD  LESVDAVSRH  LRFVSPAGDR  SDSAHAYLHP  LLRDGQHPNL240
HVLVEHNVSR  VLFDDDDDKQ  ACGIELVPNP  LFHPQSPPSP  PFTVKSRLNA  VVLSAGALCT300
PSILERSGIG  AAAVLERAGV  PLKVDLPAVG  ENLQDHHMLL  VPFRSAFPPE  VLGNVALLGD360
IADVPRQAEA  LSVCGRRGSN  FIEAAAKLRP  SADEVEALGA  DFREGWERDY  VTRPGRGLVQ420
ICMAGGFPGP  NDEPSCENIA  LSAFTLYPYS  RGSVHITGPS  PTSDEPAFDS  GIFSSSPSSA480
PSLSSPSSSV  SSLSASSSSS  FDVAASCWTY  KKLRDIARRL  DSYRGEVAYA  HPPFPQGSGA540
ALSQLPVDGP  SLAEKCGGPD  KVPKLVYSAE  DDAVLEAYVR  NAVQTTWHTL  GSVRMGPREG600
DDQGGPKGAV  DSSLNVYGVK  GLKVVDLSIV  PENIGGNTNM  TAIAIGEKGA  DILLRELGIL660
KTD663

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_3(12-658)

MGLSNKFTDE  VKEVDVIIVG  GGTAGCVVAS  RLAAAAPNLH  VLVVEGGRDN  YKDPLIINPF60
AFIKNQDPSA  KTALFFRAGK  SEDLGGRELV  VPTGGILGGG  SSINFLMYTR  GHRSDFESWN120
TPGWGPDDML  PFLKKARQPT  PPLQPGSQAE  TYHGTGSAAV  HGSTGPIHIS  SGTYRNEELT180
TDFIRAVTSL  GFPETADLQD  LESVDAVSRH  LRFVSPAGDR  SDSAHAYLHP  LLRDGQHPNL240
HVLVEHNVSR  VLFDDDDDKQ  ACGIELVPNP  LFHPQSPPSP  PFTVKSRLNA  VVLSAGALCT300
PSILERSGIG  AAAVLERAGV  PLKVDLPAVG  ENLQDHHMLL  VPFRSAFPPE  VLGNVALLGD360
IADVPRQAEA  LSVCGRRGSN  FIEAAAKLRP  SADEVEALGA  DFREGWERDY  VTRPGRGLVQ420
ICMAGGFPGP  NDEPSCENIA  LSAFTLYPYS  RGSVHITGPS  PTSDEPAFDS  GIFSSSPSSA480
PSLSSPSSSV  SSLSASSSSS  FDVAASCWTY  KKLRDIARRL  DSYRGEVAYA  HPPFPQGSGA540
ALSQLPVDGP  SLAEKCGGPD  KVPKLVYSAE  DDAVLEAYVR  NAVQTTWHTL  GSVRMGPREG600
DDQGGPKGAV  DSSLNVYGVK  GLKVVDLSIV  PENIGGNTNM  TAIAIGEKGA  DILLRELGIL660
KTD663

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help