CAZyme3D

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Entry ID

Information for CAZyme ID: QBF47558.1

Basic Information

GenBank IDQBF47558.1
FamilyGT51
Sequence Length801
UniProt IDA0A4V0ZBC9(100,100)Download
Average pLDDT?79.60
CAZy50 ID27218
CAZy50 RepYes, QBF47558.1
Structure ClusterSC_GT51_clus72
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID53458
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusJanibacter
SpeciesJanibacter limosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSHSPRSSAG  SRSRRRASSS  RSARRKGKRG  ILRKILIGFA  LLVALGIGAV  VAAYLMIDIP60
KPNDRAVQQA  SVLYYSDGKT  EMDRIATVNR  ESVTLDQIPK  PVQYAFLAAE  DRSFYDNRGI120
SPKGIFRAIS  GALAGQNRGG  GSTITQQYVK  NYFLTQDQTL  DRKGREILLS  VKIDGELSKD180
QILENYLNTI  YFGRGADGIQ  TASKAYFDKD  VQDLTPSEGA  LLASVIRGPS  LYDPALGEEQ240
TTLATGRWNY  VLDGMVSQGW  MTAAERQDQT  FPKTTAPKRS  TAKSNDIGFI  TEEVRTELRN300
RLRLSDADID  RGGFKIVTTI  DKKAQRAAAK  AVKEQRPTGE  RTSDLHIGLA  SVQPNDGAIR360
AMYGGAKFSQ  GKYGYFNSAV  DGKMQAGSTM  KPFTMIAALR  KGLPLSTTYS  GASPYYNKAF420
VSTGAGTSEI  QRNGGVVNYG  NASYGPATMR  TATQKSINTY  YAQLNLAVTP  KSTARSAEDA480
GVVGWNGDKR  APLSQTPANV  FGTDAVRVID  MANAYATIAA  EGRRATPYYI  ASVKSTGEYK540
LDYKVKKDVR  RAFPQDVARD  AIQAMSLVDK  PGGTGYPTVA  DLGRPVGGKT  GTTSNNYAAW600
FDGFTPGQLA  TAVGMYKGDG  RLVEKNQLVN  LGGFAEITGG  TIPARIWTDY  MIGALDGEPV660
KSLPPAGNVT  YRPQTDRPSN  APAPITTTQA  PAPRRTTQAP  TPRSTTTKSS  SSTSSSSSSS720
SSTTKSSTSS  STSSTSSTSS  TTKTSSTPTS  TSTTPPPPAS  TPPPSTSSST  STPPPPPMTT780
APLLTPPARP  GAGTGGVGEG  E801

Predicted 3D structure by AlphaFold2 with pLDDT = 79.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSHSPRSSAG  SRSRRRASSS  RSARRKGKRG  ILRKILIGFA  LLVALGIGAV  VAAYLMIDIP60
KPNDRAVQQA  SVLYYSDGKT  EMDRIATVNR  ESVTLDQIPK  PVQYAFLAAE  DRSFYDNRGI120
SPKGIFRAIS  GALAGQNRGG  GSTITQQYVK  NYFLTQDQTL  DRKGREILLS  VKIDGELSKD180
QILENYLNTI  YFGRGADGIQ  TASKAYFDKD  VQDLTPSEGA  LLASVIRGPS  LYDPALGEEQ240
TTLATGRWNY  VLDGMVSQGW  MTAAERQDQT  FPKTTAPKRS  TAKSNDIGFI  TEEVRTELRN300
RLRLSDADID  RGGFKIVTTI  DKKAQRAAAK  AVKEQRPTGE  RTSDLHIGLA  SVQPNDGAIR360
AMYGGAKFSQ  GKYGYFNSAV  DGKMQAGSTM  KPFTMIAALR  KGLPLSTTYS  GASPYYNKAF420
VSTGAGTSEI  QRNGGVVNYG  NASYGPATMR  TATQKSINTY  YAQLNLAVTP  KSTARSAEDA480
GVVGWNGDKR  APLSQTPANV  FGTDAVRVID  MANAYATIAA  EGRRATPYYI  ASVKSTGEYK540
LDYKVKKDVR  RAFPQDVARD  AIQAMSLVDK  PGGTGYPTVA  DLGRPVGGKT  GTTSNNYAAW600
FDGFTPGQLA  TAVGMYKGDG  RLVEKNQLVN  LGGFAEITGG  TIPARIWTDY  MIGALDGEPV660
KSLPPAGNVT  YRPQTDRPSN  APAPITTTQA  PAPRRTTQAP  TPRSTTTKSS  SSTSSSSSSS720
SSTTKSSTSS  STSSTSSTSS  TTKTSSTPTS  TSTTPPPPAS  TPPPSTSSST  STPPPPPMTT780
APLLTPPARP  GAGTGGVGEG  E801

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(81-256)

MSHSPRSSAG  SRSRRRASSS  RSARRKGKRG  ILRKILIGFA  LLVALGIGAV  VAAYLMIDIP60
KPNDRAVQQA  SVLYYSDGKT  EMDRIATVNR  ESVTLDQIPK  PVQYAFLAAE  DRSFYDNRGI120
SPKGIFRAIS  GALAGQNRGG  GSTITQQYVK  NYFLTQDQTL  DRKGREILLS  VKIDGELSKD180
QILENYLNTI  YFGRGADGIQ  TASKAYFDKD  VQDLTPSEGA  LLASVIRGPS  LYDPALGEEQ240
TTLATGRWNY  VLDGMVSQGW  MTAAERQDQT  FPKTTAPKRS  TAKSNDIGFI  TEEVRTELRN300
RLRLSDADID  RGGFKIVTTI  DKKAQRAAAK  AVKEQRPTGE  RTSDLHIGLA  SVQPNDGAIR360
AMYGGAKFSQ  GKYGYFNSAV  DGKMQAGSTM  KPFTMIAALR  KGLPLSTTYS  GASPYYNKAF420
VSTGAGTSEI  QRNGGVVNYG  NASYGPATMR  TATQKSINTY  YAQLNLAVTP  KSTARSAEDA480
GVVGWNGDKR  APLSQTPANV  FGTDAVRVID  MANAYATIAA  EGRRATPYYI  ASVKSTGEYK540
LDYKVKKDVR  RAFPQDVARD  AIQAMSLVDK  PGGTGYPTVA  DLGRPVGGKT  GTTSNNYAAW600
FDGFTPGQLA  TAVGMYKGDG  RLVEKNQLVN  LGGFAEITGG  TIPARIWTDY  MIGALDGEPV660
KSLPPAGNVT  YRPQTDRPSN  APAPITTTQA  PAPRRTTQAP  TPRSTTTKSS  SSTSSSSSSS720
SSTTKSSTSS  STSSTSSTSS  TTKTSSTPTS  TSTTPPPPAS  TPPPSTSSST  STPPPPPMTT780
APLLTPPARP  GAGTGGVGEG  E801

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help