CAZyme3D

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Entry ID

Information for CAZyme ID: QBB67341.1

Basic Information

GenBank IDQBB67341.1
FamilyCBM40, GH33
Sequence Length974
UniProt IDA0A1C6I1A0(100,100)Download
Average pLDDT?87.84
CAZy50 ID15536
CAZy50 RepYes, QBB67341.1
Structure ClusterSC_CBM40_clus5, SC_GH33_clus86
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1297617
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
Family
GenusIntestinimonas
SpeciesIntestinimonas butyriciproducens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKQKHLLRTF  SALALAMCIS  FSIAVPTGAA  SAGTAQGNTL  AEVLDRAAAN  GFCYRYDGDD60
QVFDGSRIVN  GTAQDISRLK  ASVQGTLLIR  YQSAAAANQV  LFVAGKDTAV  GHYGAVLANK120
VPAVNLQRID  FPDGMVANLS  GTAVGQDWHT  FVYSVDASDP  EVKTAKTVTS  FDGSATTQFP180
NYASWFNQNA  DVNDIQFLNI  GGTSGALANS  NNNANFVGRI  AFVAFLPEVF  TQAEAAALSS240
ETWPPSAVPV  YSAQNITINS  AADAVELSSA  LVDTLKGLHN  ASIIVKYQNT  NTGVGSFFSI300
SDPTKVNAHF  HVYESGNTFG  FELRNSDNPK  YSGTCRVYGG  ERNTVAFKAE  AGVGYKLFAN360
GALGSTVSKT  GTDYLFLDGM  SGLTTAFVGK  LKRSNDQNSY  PFTGTIESIE  IYATALTDEE420
LIDRTKDTAR  ESNAIFFNGD  ATGSTFFRIP  FLLAASDGTL  IAGTDANFGS  TGDSAENIDA480
AIRIKPNAAA  HDIMEGWLDA  SVPDVLHMRD  YADEYGYKQK  SASFIDGVIV  EDTVHTDRVL540
LLIDAFAWNG  GGFQWLNVDQ  YGQAHGGTAR  SVALGDGFCT  IGGQKYLLLS  DQNIKSGNIN600
MNVDRSKFNY  AADIYGAKNA  DGRYNVYHLT  GTPLPYTSSG  TPVDDSGLSL  GALSEYSLGE660
NYELYKDGTA  LTVTQKSSDA  AAPSVSVPMK  IFYEDSELQV  YNTNYIMQLY  STDSGRTWHT720
DKLITGMVKR  EESHYYLTGP  GHGIQLQHGE  HAGRLVVPIY  FQGEGGGGLT  GSAHTEVIYS780
DDGGVTWAHG  EPLPNTLGHE  SVIVELPNGN  LQIFMRNTAS  SGGKCKTATS  LDGGLTWVEV840
HSTFGDNSAG  TNSQLSAIAY  SQDVVSAKDG  QSYPAVLLSM  AYNRSRTDGR  IYVGLLKENG900
TYDNGSTKYE  IDWEYKYQVT  AADELFAYSS  MVELSNGKVG  MIYEASPTNS  WADGLQYMYY960
GEYDIDSLTS  QPLQ974

Predicted 3D structure by AlphaFold2 with pLDDT = 87.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKQKHLLRTF  SALALAMCIS  FSIAVPTGAA  SAGTAQGNTL  AEVLDRAAAN  GFCYRYDGDD60
QVFDGSRIVN  GTAQDISRLK  ASVQGTLLIR  YQSAAAANQV  LFVAGKDTAV  GHYGAVLANK120
VPAVNLQRID  FPDGMVANLS  GTAVGQDWHT  FVYSVDASDP  EVKTAKTVTS  FDGSATTQFP180
NYASWFNQNA  DVNDIQFLNI  GGTSGALANS  NNNANFVGRI  AFVAFLPEVF  TQAEAAALSS240
ETWPPSAVPV  YSAQNITINS  AADAVELSSA  LVDTLKGLHN  ASIIVKYQNT  NTGVGSFFSI300
SDPTKVNAHF  HVYESGNTFG  FELRNSDNPK  YSGTCRVYGG  ERNTVAFKAE  AGVGYKLFAN360
GALGSTVSKT  GTDYLFLDGM  SGLTTAFVGK  LKRSNDQNSY  PFTGTIESIE  IYATALTDEE420
LIDRTKDTAR  ESNAIFFNGD  ATGSTFFRIP  FLLAASDGTL  IAGTDANFGS  TGDSAENIDA480
AIRIKPNAAA  HDIMEGWLDA  SVPDVLHMRD  YADEYGYKQK  SASFIDGVIV  EDTVHTDRVL540
LLIDAFAWNG  GGFQWLNVDQ  YGQAHGGTAR  SVALGDGFCT  IGGQKYLLLS  DQNIKSGNIN600
MNVDRSKFNY  AADIYGAKNA  DGRYNVYHLT  GTPLPYTSSG  TPVDDSGLSL  GALSEYSLGE660
NYELYKDGTA  LTVTQKSSDA  AAPSVSVPMK  IFYEDSELQV  YNTNYIMQLY  STDSGRTWHT720
DKLITGMVKR  EESHYYLTGP  GHGIQLQHGE  HAGRLVVPIY  FQGEGGGGLT  GSAHTEVIYS780
DDGGVTWAHG  EPLPNTLGHE  SVIVELPNGN  LQIFMRNTAS  SGGKCKTATS  LDGGLTWVEV840
HSTFGDNSAG  TNSQLSAIAY  SQDVVSAKDG  QSYPAVLLSM  AYNRSRTDGR  IYVGLLKENG900
TYDNGSTKYE  IDWEYKYQVT  AADELFAYSS  MVELSNGKVG  MIYEASPTNS  WADGLQYMYY960
GEYDIDSLTS  QPLQ974

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM40(259-425)+GH33(434-948)

MKQKHLLRTF  SALALAMCIS  FSIAVPTGAA  SAGTAQGNTL  AEVLDRAAAN  GFCYRYDGDD60
QVFDGSRIVN  GTAQDISRLK  ASVQGTLLIR  YQSAAAANQV  LFVAGKDTAV  GHYGAVLANK120
VPAVNLQRID  FPDGMVANLS  GTAVGQDWHT  FVYSVDASDP  EVKTAKTVTS  FDGSATTQFP180
NYASWFNQNA  DVNDIQFLNI  GGTSGALANS  NNNANFVGRI  AFVAFLPEVF  TQAEAAALSS240
ETWPPSAVPV  YSAQNITINS  AADAVELSSA  LVDTLKGLHN  ASIIVKYQNT  NTGVGSFFSI300
SDPTKVNAHF  HVYESGNTFG  FELRNSDNPK  YSGTCRVYGG  ERNTVAFKAE  AGVGYKLFAN360
GALGSTVSKT  GTDYLFLDGM  SGLTTAFVGK  LKRSNDQNSY  PFTGTIESIE  IYATALTDEE420
LIDRTKDTAR  ESNAIFFNGD  ATGSTFFRIP  FLLAASDGTL  IAGTDANFGS  TGDSAENIDA480
AIRIKPNAAA  HDIMEGWLDA  SVPDVLHMRD  YADEYGYKQK  SASFIDGVIV  EDTVHTDRVL540
LLIDAFAWNG  GGFQWLNVDQ  YGQAHGGTAR  SVALGDGFCT  IGGQKYLLLS  DQNIKSGNIN600
MNVDRSKFNY  AADIYGAKNA  DGRYNVYHLT  GTPLPYTSSG  TPVDDSGLSL  GALSEYSLGE660
NYELYKDGTA  LTVTQKSSDA  AAPSVSVPMK  IFYEDSELQV  YNTNYIMQLY  STDSGRTWHT720
DKLITGMVKR  EESHYYLTGP  GHGIQLQHGE  HAGRLVVPIY  FQGEGGGGLT  GSAHTEVIYS780
DDGGVTWAHG  EPLPNTLGHE  SVIVELPNGN  LQIFMRNTAS  SGGKCKTATS  LDGGLTWVEV840
HSTFGDNSAG  TNSQLSAIAY  SQDVVSAKDG  QSYPAVLLSM  AYNRSRTDGR  IYVGLLKENG900
TYDNGSTKYE  IDWEYKYQVT  AADELFAYSS  MVELSNGKVG  MIYEASPTNS  WADGLQYMYY960
GEYDIDSLTS  QPLQ974

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help