CAZyme3D

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Entry ID

Information for CAZyme ID: QAT17016.1

Basic Information

GenBank IDQAT17016.1
FamilyGT0
Sequence Length391
UniProt IDA0A410P4C3(100,100)Download
Average pLDDT?92.10
CAZy50 ID104030
CAZy50 RepYes, QAT17016.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1930593
KingdomBacteria
PhylumCandidatus Omnitrophota
Class
Order
Family
GenusCandidatus Velamenicoccus
SpeciesCandidatus Velamenicoccus archaeovorus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILLVHPQM  SFYGGAETVV  IHLANELRNS  GQNVSILTLS  VCDEVRRACA  DIPFYLPPEP60
VMPALHHKNL  ADGIADFMKQ  IFLLRDLIKI  HLSKADVVHI  HNFPATWACA  LAGVRDAVWM120
CNEPPDSWNT  LSRSPLHALL  NSVGAHIDGY  LVRRTAKRIC  GADRINADRI  KKRYRHRVDI180
VPYGIDFDFF  SRPPVDRQSI  LHKYGLSGHF  VITQVGTVTV  QKNQLESIKA  LFSVKKVFAQ240
TCLVLAGPEN  QDYRRELDSF  IDAHGLKDSV  FFLGPLARKD  IVELYHVSDL  ALFPVKTQGG300
WLAPFEALCA  GTPVIVSETM  GASDLIKTHD  LGIVTNDYAE  AVMEIYQNRK  SYAEKARISR360
EWVEKNLTWE  NFAKENLRIF  TEVYRDKKGV  V391

Predicted 3D structure by AlphaFold2 with pLDDT = 92.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILLVHPQM  SFYGGAETVV  IHLANELRNS  GQNVSILTLS  VCDEVRRACA  DIPFYLPPEP60
VMPALHHKNL  ADGIADFMKQ  IFLLRDLIKI  HLSKADVVHI  HNFPATWACA  LAGVRDAVWM120
CNEPPDSWNT  LSRSPLHALL  NSVGAHIDGY  LVRRTAKRIC  GADRINADRI  KKRYRHRVDI180
VPYGIDFDFF  SRPPVDRQSI  LHKYGLSGHF  VITQVGTVTV  QKNQLESIKA  LFSVKKVFAQ240
TCLVLAGPEN  QDYRRELDSF  IDAHGLKDSV  FFLGPLARKD  IVELYHVSDL  ALFPVKTQGG300
WLAPFEALCA  GTPVIVSETM  GASDLIKTHD  LGIVTNDYAE  AVMEIYQNRK  SYAEKARISR360
EWVEKNLTWE  NFAKENLRIF  TEVYRDKKGV  V391

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(209-353)

MKILLVHPQM  SFYGGAETVV  IHLANELRNS  GQNVSILTLS  VCDEVRRACA  DIPFYLPPEP60
VMPALHHKNL  ADGIADFMKQ  IFLLRDLIKI  HLSKADVVHI  HNFPATWACA  LAGVRDAVWM120
CNEPPDSWNT  LSRSPLHALL  NSVGAHIDGY  LVRRTAKRIC  GADRINADRI  KKRYRHRVDI180
VPYGIDFDFF  SRPPVDRQSI  LHKYGLSGHF  VITQVGTVTV  QKNQLESIKA  LFSVKKVFAQ240
TCLVLAGPEN  QDYRRELDSF  IDAHGLKDSV  FFLGPLARKD  IVELYHVSDL  ALFPVKTQGG300
WLAPFEALCA  GTPVIVSETM  GASDLIKTHD  LGIVTNDYAE  AVMEIYQNRK  SYAEKARISR360
EWVEKNLTWE  NFAKENLRIF  TEVYRDKKGV  V391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help