CAZyme3D

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Entry ID

Information for CAZyme ID: QAA77149.1

Basic Information

GenBank IDQAA77149.1
FamilyGH23
Sequence Length571
UniProt IDA0A410FVN7(100,100)Download
Average pLDDT?91.91
CAZy50 ID56432
CAZy50 RepYes, QAA77149.1
Structure ClusterSC_GH23_clus496
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2501609
KingdomBacteria
PhylumCandidatus Bipolaricaulota
ClassCandidatus Bipolaricaulia
OrderCandidatus Bipolaricaulales
FamilyCandidatus Bipolaricaulaceae
GenusCandidatus Bipolaricaulis
SpeciesCandidatus Bipolaricaulis sibiricus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGLIGPLVL  LGLLVGLTAF  LLWTPAVAPH  IGDYIRLAEA  RTHLSSSVRG  LEALAGRDDG60
VGWQARSDLG  RWYLAQGAAR  EAAALFRSAL  ALYATSDLRA  DLAVALEASG  RPGDALGEWQ120
QLLPRRDAVQ  AVLRIEPDPV  RAASILTRGG  AATDALATLA  AVGGTQAALE  RARALAATGK180
LTEALVEFER  FLSSSPGDAG  VHLEYGRALE  RAGALDRALL  AYRAAGAAGA  YAAGLLLESL240
GREDDALAAY  RQSAEPEAKW  RAARLLESSG  RTPEALVLYG  ELARGAHRVG  DDAALRLYLL300
HTRRGEPTKA  AEARRYLSPA  LAWLAGVPVP  APALTSDPPR  ASPPVVSLAT  DLVQAFPGAD360
GRRWAEIELA  IAAARGTAAD  RLAIGEWYVA  QGDWRNAFRM  GSLVLGSLPC  RRAYHLAYPL420
AWWDTVLRWA  GTYGVDPYLV  LAVIREESGF  LPTAVSSSDA  RGLMQLLPST  ARWIAEEKLR480
IPYREADLFA  PDYNIRLGTW  YLRHLLDQFG  GDLAWAVAAY  NGGPGNLRRW  TADGVASPAD540
LPAALRSPET  REYLTKVLNA  WLTYRWLYGG  E571

Predicted 3D structure by AlphaFold2 with pLDDT = 91.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKGLIGPLVL  LGLLVGLTAF  LLWTPAVAPH  IGDYIRLAEA  RTHLSSSVRG  LEALAGRDDG60
VGWQARSDLG  RWYLAQGAAR  EAAALFRSAL  ALYATSDLRA  DLAVALEASG  RPGDALGEWQ120
QLLPRRDAVQ  AVLRIEPDPV  RAASILTRGG  AATDALATLA  AVGGTQAALE  RARALAATGK180
LTEALVEFER  FLSSSPGDAG  VHLEYGRALE  RAGALDRALL  AYRAAGAAGA  YAAGLLLESL240
GREDDALAAY  RQSAEPEAKW  RAARLLESSG  RTPEALVLYG  ELARGAHRVG  DDAALRLYLL300
HTRRGEPTKA  AEARRYLSPA  LAWLAGVPVP  APALTSDPPR  ASPPVVSLAT  DLVQAFPGAD360
GRRWAEIELA  IAAARGTAAD  RLAIGEWYVA  QGDWRNAFRM  GSLVLGSLPC  RRAYHLAYPL420
AWWDTVLRWA  GTYGVDPYLV  LAVIREESGF  LPTAVSSSDA  RGLMQLLPST  ARWIAEEKLR480
IPYREADLFA  PDYNIRLGTW  YLRHLLDQFG  GDLAWAVAAY  NGGPGNLRRW  TADGVASPAD540
LPAALRSPET  REYLTKVLNA  WLTYRWLYGG  E571

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(436-560)

MKGLIGPLVL  LGLLVGLTAF  LLWTPAVAPH  IGDYIRLAEA  RTHLSSSVRG  LEALAGRDDG60
VGWQARSDLG  RWYLAQGAAR  EAAALFRSAL  ALYATSDLRA  DLAVALEASG  RPGDALGEWQ120
QLLPRRDAVQ  AVLRIEPDPV  RAASILTRGG  AATDALATLA  AVGGTQAALE  RARALAATGK180
LTEALVEFER  FLSSSPGDAG  VHLEYGRALE  RAGALDRALL  AYRAAGAAGA  YAAGLLLESL240
GREDDALAAY  RQSAEPEAKW  RAARLLESSG  RTPEALVLYG  ELARGAHRVG  DDAALRLYLL300
HTRRGEPTKA  AEARRYLSPA  LAWLAGVPVP  APALTSDPPR  ASPPVVSLAT  DLVQAFPGAD360
GRRWAEIELA  IAAARGTAAD  RLAIGEWYVA  QGDWRNAFRM  GSLVLGSLPC  RRAYHLAYPL420
AWWDTVLRWA  GTYGVDPYLV  LAVIREESGF  LPTAVSSSDA  RGLMQLLPST  ARWIAEEKLR480
IPYREADLFA  PDYNIRLGTW  YLRHLLDQFG  GDLAWAVAAY  NGGPGNLRRW  TADGVASPAD540
LPAALRSPET  REYLTKVLNA  WLTYRWLYGG  E571

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help