CAZyme3D

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Entry ID

Information for CAZyme ID: KXS18720.1

Basic Information

GenBank IDKXS18720.1
FamilyGH5_34
Sequence Length443
UniProt IDA0A139APP3(100,100)Download
Average pLDDT?82.43
CAZy50 ID81936
CAZy50 RepYes, KXS18720.1
Structure ClusterSC_GH5_clus39
EC Number(s)3.2.1.-
Substrates(s)xylan | beta-mannan | beta-glycan | polyphenol

Taxonomy

Tax ID1344416
KingdomEukaryota
PhylumChytridiomycota
ClassMonoblepharidomycetes
OrderMonoblepharidales
FamilyGonapodyaceae
GenusGonapodya
SpeciesGonapodya prolifera

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARLSSLIAL  VLAFVAVSAP  ALAARGRPRL  NGKTFVADSG  VPLRGPFTST  EWTPAVPAAN60
IANMRNYNFN  AIHLYAETFD  PNYPAAGSQK  PGYAATRVDQ  IVAATKAANM  YVVIVLANGA120
NNGKFNLNYA  KDFWSFYAAR  YKNETHVIYE  IHNEPVQWGP  PYISSTQSPG  AVSMNADCYK180
IIRAVAPDTP  VLLFTYASIG  GGSSAAGAVK  DAQSFNTAVF  GNANAQWTNE  AIAIHGYWGA240
QGASDAAKAL  NAAGFSVVLT  EFAAATSPTS  PNGGQDTVLT  GFMEQQGVSW  LTFLHVPPTG300
VSGDVTDPNQ  YTNRMTAAGI  GFDRDPGLNA  VGGGQAAPVP  VPAPAPVPSP  VPAPVPAVPA360
VRTTTARPAP  SPSPVPAPVP  APAPVPAPVP  APVPAPVPAP  VPAPVPASPA  ATTTRRHRTR420
PPRTTTAPAV  PAPPPAATPK  VCG443

Predicted 3D structure by AlphaFold2 with pLDDT = 82.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARLSSLIAL  VLAFVAVSAP  ALAARGRPRL  NGKTFVADSG  VPLRGPFTST  EWTPAVPAAN60
IANMRNYNFN  AIHLYAETFD  PNYPAAGSQK  PGYAATRVDQ  IVAATKAANM  YVVIVLANGA120
NNGKFNLNYA  KDFWSFYAAR  YKNETHVIYE  IHNEPVQWGP  PYISSTQSPG  AVSMNADCYK180
IIRAVAPDTP  VLLFTYASIG  GGSSAAGAVK  DAQSFNTAVF  GNANAQWTNE  AIAIHGYWGA240
QGASDAAKAL  NAAGFSVVLT  EFAAATSPTS  PNGGQDTVLT  GFMEQQGVSW  LTFLHVPPTG300
VSGDVTDPNQ  YTNRMTAAGI  GFDRDPGLNA  VGGGQAAPVP  VPAPAPVPSP  VPAPVPAVPA360
VRTTTARPAP  SPSPVPAPVP  APAPVPAPVP  APVPAPVPAP  VPAPVPASPA  ATTTRRHRTR420
PPRTTTAPAV  PAPPPAATPK  VCG443

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_34(53-290)

MARLSSLIAL  VLAFVAVSAP  ALAARGRPRL  NGKTFVADSG  VPLRGPFTST  EWTPAVPAAN60
IANMRNYNFN  AIHLYAETFD  PNYPAAGSQK  PGYAATRVDQ  IVAATKAANM  YVVIVLANGA120
NNGKFNLNYA  KDFWSFYAAR  YKNETHVIYE  IHNEPVQWGP  PYISSTQSPG  AVSMNADCYK180
IIRAVAPDTP  VLLFTYASIG  GGSSAAGAVK  DAQSFNTAVF  GNANAQWTNE  AIAIHGYWGA240
QGASDAAKAL  NAAGFSVVLT  EFAAATSPTS  PNGGQDTVLT  GFMEQQGVSW  LTFLHVPPTG300
VSGDVTDPNQ  YTNRMTAAGI  GFDRDPGLNA  VGGGQAAPVP  VPAPAPVPSP  VPAPVPAVPA360
VRTTTARPAP  SPSPVPAPVP  APAPVPAPVP  APVPAPVPAP  VPAPVPASPA  ATTTRRHRTR420
PPRTTTAPAV  PAPPPAATPK  VCG443

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help