CAZyme3D

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Entry ID

Information for CAZyme ID: EPE27895.1

Basic Information

GenBank IDEPE27895.1
FamilyGH135
Sequence Length265
UniProt IDS3CQC3(100,100)Download
Average pLDDT?90.14
CAZy50 ID167723
CAZy50 RepYes, EPE27895.1
Structure ClusterSC_GH135_clus27
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1116229
KingdomEukaryota
PhylumAscomycota
ClassLeotiomycetes
OrderHelotiales
FamilyHelotiaceae
GenusGlarea
SpeciesGlarea lozoyensis
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/S3CQC3.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFWRKKNPEK  PTVLVPLYVY  PEHGSWNLLY  AIIKGNPQIE  FLIIINPNSG  PGSEDLPDEN60
YTEGITLLNG  YANVTLVGYI  STDYFKRDIN  HVLKDVRTYA  GWSKGKGFGD  PNSKQKDLGL120
RGVFLDETPN  EWSVDAGRYL  ERLTGVIKSH  GDEPIIIHNP  GTIPSPLFTP  YATLTVMFEG180
SYDIYKSANM  TTKTSVFAKM  SKASREKLAV  ILHSLPKTMG  DKEETQMMKG  LNKHFGAVFV240
TALNVNYYES  FGEEFQSWVG  GLSSK265

Predicted 3D structure by AlphaFold2 with pLDDT = 90.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFWRKKNPEK  PTVLVPLYVY  PEHGSWNLLY  AIIKGNPQIE  FLIIINPNSG  PGSEDLPDEN60
YTEGITLLNG  YANVTLVGYI  STDYFKRDIN  HVLKDVRTYA  GWSKGKGFGD  PNSKQKDLGL120
RGVFLDETPN  EWSVDAGRYL  ERLTGVIKSH  GDEPIIIHNP  GTIPSPLFTP  YATLTVMFEG180
SYDIYKSANM  TTKTSVFAKM  SKASREKLAV  ILHSLPKTMG  DKEETQMMKG  LNKHFGAVFV240
TALNVNYYES  FGEEFQSWVG  GLSSK265

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH135(13-259)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help