CAZyme3D

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Entry ID

Information for CAZyme ID: EIE23449.1

Basic Information

GenBank IDEIE23449.1
FamilyGT96
Sequence Length1402
UniProt IDI0YYI0(100,100)Download
Average pLDDT?69.15
CAZy50 ID4885
CAZy50 RepYes, EIE23449.1
Structure ClusterSC_GT96_clus13
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID574566
KingdomEukaryota
PhylumChlorophyta
ClassTrebouxiophyceae
Order
Family
GenusCoccomyxa
SpeciesCoccomyxa subellipsoidea
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/I0YYI0.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVPAVGLHA  FISVAHAGGQ  KQGRVLRLNL  ATAALEPQVH  RTSAARPLTV  SPGGGYVATI60
DKHTLFIWST  KDADKRPLAL  HHTKAFTCVA  IDATGDRVAA  GDVSGRISMW  NGFAPAVAAA120
AAASEDKGAA  GEVASQSAQQ  QGQKRKSREV  RDAGLAKETL  HWHSSAVRSI  VFSQDGSYLL180
SGGAEAVLVI  WRLDNGARTY  LPRMAGALTA  ITPVPSDAAC  YILTQADNTI  RMVNVAAMRV240
LCSVHGLRPR  VAGTPSGTVA  ALVPGSGELA  LAGAGSVLQL  FDAVRDRHID  RVQVGHRNVA300
SLAGTDEASQ  GGQRAVESHI  SHIAYSSDGT  VMATVDVHPS  AAASGAVGSA  LKFWDRRITG360
AAAGGAPLYT  LNSHISEPQR  GVVSGLAYHP  SEHIAATTGV  DGVLSMWRRS  AAGKRSEKAP420
AAWRCTSTAA  YKGQPMSAVA  FSGDGSLVAA  AVSGSVTLWD  PSSNALITVL  ANPAPARSSA480
MRRLEFVPST  HFLVGISADA  APSLVVWNLV  TASVWWSAAV  ASSCLAVDPH  HGAFAIAVPP540
EPLRRFSGSA  APPALPAGPA  PTRPMTNGRS  ETTVRQPRRA  LPPLNAVHMN  GRRDAPATSG600
RPVMNGVAAN  GGEAASGSDE  DAGHGGEDPA  RQLQAGAACS  GGAFWFEEAE  AAGDERALAH660
ASGGVAAEPA  ASGRGGLMYG  GGGGSVLLFD  AGCPTPKQAW  LLPRSGAAAL  MFAGNGTPLA720
AAGADRAPAG  TSPLLILTND  RQYTIAAAPG  ADTTESAADV  SAAQTAGVPK  RAPVGFEAAF780
GPLNAARKTP  EQPEARYSAA  DDGQTSVQEL  WDAPSHALPP  LSVLAAVLFA  ALCFLGYAHA840
SRAKSASVHT  IIPVECTNGY  FEWQILGFVY  SARRAGQEGP  ITRLMSCTEE  QLKDYKGMDL900
VPTFVAPSFK  NIVPDDEYAA  YNKPGAIMAW  LQEHEPKEDY  ILIVDADNIM  RFPFDPIELK960
VEPGWAYSGY  YFYEILKGCS  NELADKHIAQ  VQPRQDTLAG  PKGRRADTVG  VPILMAKSDL1020
KKVAPLWLEY  SKRFRLDPAT  FDGNLTGDDF  TKTPGDKSWM  SEMYGYSYAA  AVANVWHRRV1080
DYTDSLLPGY  AAIWPPKVLH  YGAKWTVPNT  TWAWHKAWYH  DDFDVTVCPP  WDLSAERPSA1140
GLFPYPPRPL  EIPSEGEDFL  RDLIAIEPVV  VLNAAFCERH  MKHCPKSQQL  EQECAKVRQQ1200
EIEMDIAFDV  MEMVMQEEEC  QNKHPDCEEW  ARNGECEKSP  RYMFWGCRLS  CGRCYPPTLQ1260
VRHHAKVPTT  AVAQGSAWPY  GAGKKKGSGS  WLGTPKASTL  DGRQWLDAHP  ELANPVEAMP1320
AVQPGRHNAH  SLRLRNRAAS  GLLKGLSQGQ  GSQLQLGGRS  AALADVTEEQ  MIGDVTFFIV1380
LMGWLGVVLW  GLILMYFLGI  LQ1402

Predicted 3D structure by AlphaFold2 with pLDDT = 69.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVVPAVGLHA  FISVAHAGGQ  KQGRVLRLNL  ATAALEPQVH  RTSAARPLTV  SPGGGYVATI60
DKHTLFIWST  KDADKRPLAL  HHTKAFTCVA  IDATGDRVAA  GDVSGRISMW  NGFAPAVAAA120
AAASEDKGAA  GEVASQSAQQ  QGQKRKSREV  RDAGLAKETL  HWHSSAVRSI  VFSQDGSYLL180
SGGAEAVLVI  WRLDNGARTY  LPRMAGALTA  ITPVPSDAAC  YILTQADNTI  RMVNVAAMRV240
LCSVHGLRPR  VAGTPSGTVA  ALVPGSGELA  LAGAGSVLQL  FDAVRDRHID  RVQVGHRNVA300
SLAGTDEASQ  GGQRAVESHI  SHIAYSSDGT  VMATVDVHPS  AAASGAVGSA  LKFWDRRITG360
AAAGGAPLYT  LNSHISEPQR  GVVSGLAYHP  SEHIAATTGV  DGVLSMWRRS  AAGKRSEKAP420
AAWRCTSTAA  YKGQPMSAVA  FSGDGSLVAA  AVSGSVTLWD  PSSNALITVL  ANPAPARSSA480
MRRLEFVPST  HFLVGISADA  APSLVVWNLV  TASVWWSAAV  ASSCLAVDPH  HGAFAIAVPP540
EPLRRFSGSA  APPALPAGPA  PTRPMTNGRS  ETTVRQPRRA  LPPLNAVHMN  GRRDAPATSG600
RPVMNGVAAN  GGEAASGSDE  DAGHGGEDPA  RQLQAGAACS  GGAFWFEEAE  AAGDERALAH660
ASGGVAAEPA  ASGRGGLMYG  GGGGSVLLFD  AGCPTPKQAW  LLPRSGAAAL  MFAGNGTPLA720
AAGADRAPAG  TSPLLILTND  RQYTIAAAPG  ADTTESAADV  SAAQTAGVPK  RAPVGFEAAF780
GPLNAARKTP  EQPEARYSAA  DDGQTSVQEL  WDAPSHALPP  LSVLAAVLFA  ALCFLGYAHA840
SRAKSASVHT  IIPVECTNGY  FEWQILGFVY  SARRAGQEGP  ITRLMSCTEE  QLKDYKGMDL900
VPTFVAPSFK  NIVPDDEYAA  YNKPGAIMAW  LQEHEPKEDY  ILIVDADNIM  RFPFDPIELK960
VEPGWAYSGY  YFYEILKGCS  NELADKHIAQ  VQPRQDTLAG  PKGRRADTVG  VPILMAKSDL1020
KKVAPLWLEY  SKRFRLDPAT  FDGNLTGDDF  TKTPGDKSWM  SEMYGYSYAA  AVANVWHRRV1080
DYTDSLLPGY  AAIWPPKVLH  YGAKWTVPNT  TWAWHKAWYH  DDFDVTVCPP  WDLSAERPSA1140
GLFPYPPRPL  EIPSEGEDFL  RDLIAIEPVV  VLNAAFCERH  MKHCPKSQQL  EQECAKVRQQ1200
EIEMDIAFDV  MEMVMQEEEC  QNKHPDCEEW  ARNGECEKSP  RYMFWGCRLS  CGRCYPPTLQ1260
VRHHAKVPTT  AVAQGSAWPY  GAGKKKGSGS  WLGTPKASTL  DGRQWLDAHP  ELANPVEAMP1320
AVQPGRHNAH  SLRLRNRAAS  GLLKGLSQGQ  GSQLQLGGRS  AALADVTEEQ  MIGDVTFFIV1380
LMGWLGVVLW  GLILMYFLGI  LQ1402

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT96(848-1175)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help