CAZyme3D

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Entry ID

Information for CAZyme ID: EGX47403.1

Basic Information

GenBank IDEGX47403.1
FamilyGT17
Sequence Length278
UniProt IDG1XHL5(100,100)Download
Average pLDDT?91.27
CAZy50 ID163658
CAZy50 RepYes, EGX47403.1
Structure ClusterSC_GT17_clus32
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID756982
KingdomEukaryota
PhylumAscomycota
ClassOrbiliomycetes
OrderOrbiliales
FamilyOrbiliaceae
GenusOrbilia
SpeciesOrbilia oligospora

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSVELDLAI  IRLQELWDVV  DTFIVIEGNR  TFTGDFKPLT  FAANRHRFDF  AKEKILYEET60
TTLLENPHDP  FDNEKRSRDH  ATEIIKALKL  EESDLVIVSD  VDEIPNRDTI  ELLKACQGYP120
QYLHLEMKSY  MYSFEFPAPR  PQWRAMAGQI  GTNGEIEYDH  RRMGDILLAN  TGVHCSWCLR180
SIQDFQFKMQ  AYSHADRASK  SVLDRNNIQK  AICDGSNVEQ  ILPEVFTFSD  LAKELGKLER240
SYDMTTIPKA  AVDGRQQWPY  LFPGGCIRQD  SPAKPLTI278

Predicted 3D structure by AlphaFold2 with pLDDT = 91.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFSVELDLAI  IRLQELWDVV  DTFIVIEGNR  TFTGDFKPLT  FAANRHRFDF  AKEKILYEET60
TTLLENPHDP  FDNEKRSRDH  ATEIIKALKL  EESDLVIVSD  VDEIPNRDTI  ELLKACQGYP120
QYLHLEMKSY  MYSFEFPAPR  PQWRAMAGQI  GTNGEIEYDH  RRMGDILLAN  TGVHCSWCLR180
SIQDFQFKMQ  AYSHADRASK  SVLDRNNIQK  AICDGSNVEQ  ILPEVFTFSD  LAKELGKLER240
SYDMTTIPKA  AVDGRQQWPY  LFPGGCIRQD  SPAKPLTI278

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT17(1-262)

MFSVELDLAI  IRLQELWDVV  DTFIVIEGNR  TFTGDFKPLT  FAANRHRFDF  AKEKILYEET60
TTLLENPHDP  FDNEKRSRDH  ATEIIKALKL  EESDLVIVSD  VDEIPNRDTI  ELLKACQGYP120
QYLHLEMKSY  MYSFEFPAPR  PQWRAMAGQI  GTNGEIEYDH  RRMGDILLAN  TGVHCSWCLR180
SIQDFQFKMQ  AYSHADRASK  SVLDRNNIQK  AICDGSNVEQ  ILPEVFTFSD  LAKELGKLER240
SYDMTTIPKA  AVDGRQQWPY  LFPGGCIRQD  SPAKPLTI278

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help