CAZyme3D

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Entry ID

Information for CAZyme ID: EFN51892.1

Basic Information

GenBank IDEFN51892.1
FamilyGT96
Sequence Length588
UniProt IDE1ZQ90(100,100)Download
Average pLDDT?69.34
CAZy50 ID54043
CAZy50 RepYes, EFN51892.1
Structure ClusterSC_GT96_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID554065
KingdomEukaryota
PhylumChlorophyta
ClassTrebouxiophyceae
OrderChlorellales
FamilyChlorellaceae
GenusChlorella
SpeciesChlorella variabilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVSEGIVYSM  RKAGMPGPVT  RLVSCTPEDW  ERLPQADREL  EFEGVATHMA  PSYSVHPRTG60
DVYPGINKPV  AVIDWLAHTD  VREDYVLVID  ADMIMRRPVL  PQASGRWVVW  VLAGRGCACG120
PALAQELGAA  PGTAVSGFFG  YMVGVENELA  LRHVPEVEPR  QDSLAGPVGR  RGDQVGGFTL180
MEREDLRRVG  PLWLQLSEDV  RFDPKAWNLT  GDHYAREGER  PWIAEMYGYS  FGCSRAGVWH240
RVHTTAMLYP  GYEVGLEHFQ  EPVRVLHYGI  LWEVGAGSGY  SFDKHWHYDF  QALACPPWNL300
SSSPHSAKRG  LFAHPPRPSS  LATTGASFLR  DLLAIEVIST  LNEAFCDRHR  KVCPPSEELE360
RECGTAEEIA  REVAAAHASL  EIPPELVQQA  EEAAEEQQAQ  AAEAAEEAPG  PYPYHERDIV420
AEGIAQHPER  RAERAAAAAD  AEDPAWDSEA  AAEAYHAEAG  AEDWDEAAAA  EADHGEAGAD480
DWEHSEAAGQ  AYHGEAGAED  WEDSEAAPPA  YYEEAEADDW  EDFQAEADHE  QAAEEWEEGE540
PQDGSEWETA  EERSVEGLAE  EDSQQATQYT  AADEAGTGSD  ACEPHTEL588

Predicted 3D structure by AlphaFold2 with pLDDT = 69.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVSEGIVYSM  RKAGMPGPVT  RLVSCTPEDW  ERLPQADREL  EFEGVATHMA  PSYSVHPRTG60
DVYPGINKPV  AVIDWLAHTD  VREDYVLVID  ADMIMRRPVL  PQASGRWVVW  VLAGRGCACG120
PALAQELGAA  PGTAVSGFFG  YMVGVENELA  LRHVPEVEPR  QDSLAGPVGR  RGDQVGGFTL180
MEREDLRRVG  PLWLQLSEDV  RFDPKAWNLT  GDHYAREGER  PWIAEMYGYS  FGCSRAGVWH240
RVHTTAMLYP  GYEVGLEHFQ  EPVRVLHYGI  LWEVGAGSGY  SFDKHWHYDF  QALACPPWNL300
SSSPHSAKRG  LFAHPPRPSS  LATTGASFLR  DLLAIEVIST  LNEAFCDRHR  KVCPPSEELE360
RECGTAEEIA  REVAAAHASL  EIPPELVQQA  EEAAEEQQAQ  AAEAAEEAPG  PYPYHERDIV420
AEGIAQHPER  RAERAAAAAD  AEDPAWDSEA  AAEAYHAEAG  AEDWDEAAAA  EADHGEAGAD480
DWEHSEAAGQ  AYHGEAGAED  WEDSEAAPPA  YYEEAEADDW  EDFQAEADHE  QAAEEWEEGE540
PQDGSEWETA  EERSVEGLAE  EDSQQATQYT  AADEAGTGSD  ACEPHTEL588

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT96(107-345)

MVSEGIVYSM  RKAGMPGPVT  RLVSCTPEDW  ERLPQADREL  EFEGVATHMA  PSYSVHPRTG60
DVYPGINKPV  AVIDWLAHTD  VREDYVLVID  ADMIMRRPVL  PQASGRWVVW  VLAGRGCACG120
PALAQELGAA  PGTAVSGFFG  YMVGVENELA  LRHVPEVEPR  QDSLAGPVGR  RGDQVGGFTL180
MEREDLRRVG  PLWLQLSEDV  RFDPKAWNLT  GDHYAREGER  PWIAEMYGYS  FGCSRAGVWH240
RVHTTAMLYP  GYEVGLEHFQ  EPVRVLHYGI  LWEVGAGSGY  SFDKHWHYDF  QALACPPWNL300
SSSPHSAKRG  LFAHPPRPSS  LATTGASFLR  DLLAIEVIST  LNEAFCDRHR  KVCPPSEELE360
RECGTAEEIA  REVAAAHASL  EIPPELVQQA  EEAAEEQQAQ  AAEAAEEAPG  PYPYHERDIV420
AEGIAQHPER  RAERAAAAAD  AEDPAWDSEA  AAEAYHAEAG  AEDWDEAAAA  EADHGEAGAD480
DWEHSEAAGQ  AYHGEAGAED  WEDSEAAPPA  YYEEAEADDW  EDFQAEADHE  QAAEEWEEGE540
PQDGSEWETA  EERSVEGLAE  EDSQQATQYT  AADEAGTGSD  ACEPHTEL588

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help