CAZyme3D

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Entry ID

Information for CAZyme ID: EAA66657.1

Basic Information

GenBank IDEAA66657.1
FamilyGH72
Sequence Length550
UniProt IDQ5BFX2(100,100)Download
Average pLDDT?82.10
CAZy50 ID59597
CAZy50 RepYes, EAA66657.1
Structure ClusterSC_GH72_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID227321
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusAspergillus
SpeciesAspergillus nidulans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIPTYGRILA  AACALATTAS  AVTPIEVKGK  DFVNSKTGDR  FQILGVDYQP  GGTNAVDGKS60
DPLSDREACL  RDAALMQQLG  VNTIRIYNLS  PKLNHDECVS  IFNAAGIYMI  LDVNSPLYPG120
YIDRTAPWTT  YTKDYYTQVF  GIIEAFKDYP  NTLAFFAGNE  VINEDSVEQV  PQYIRAVQRD180
MKEYISKHLD  REIPVGYSAA  DVRPILEDTL  NYFMCEDEDY  PNSSSDFFGL  NSYSWCGDAS240
YKSAGYDVLT  EMMSEATIPV  FFSEYGCNEV  QPRKFTEVQA  IYGEEMTQTF  SGGLVYEYTQ300
EENDYGLVKI  NNNDTVTLLV  DFDNLQTQYA  KLDMDRISAS  NASQTSVKPI  KCSADLIKNG360
TFSSNFTLPA  KPPGVQDLIN  NGYSKVDAGK  LVDVESEEVS  TTIYDHNGKE  ITGLKLTVLA420
DGESNQPGSS  SIGSSSNSGS  DSDSGDDDNA  AGIVAIPVGL  ATIAATLFDN  VSLGLYYTSQ480
MFSSLQDYTS  VVGRLTSSKS  DRTTNGAGYL  PEPSVFFSVR  YHMFEEVLII  LNMFMAALEA540
LKFDLTLQLK  550

Predicted 3D structure by AlphaFold2 with pLDDT = 82.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIPTYGRILA  AACALATTAS  AVTPIEVKGK  DFVNSKTGDR  FQILGVDYQP  GGTNAVDGKS60
DPLSDREACL  RDAALMQQLG  VNTIRIYNLS  PKLNHDECVS  IFNAAGIYMI  LDVNSPLYPG120
YIDRTAPWTT  YTKDYYTQVF  GIIEAFKDYP  NTLAFFAGNE  VINEDSVEQV  PQYIRAVQRD180
MKEYISKHLD  REIPVGYSAA  DVRPILEDTL  NYFMCEDEDY  PNSSSDFFGL  NSYSWCGDAS240
YKSAGYDVLT  EMMSEATIPV  FFSEYGCNEV  QPRKFTEVQA  IYGEEMTQTF  SGGLVYEYTQ300
EENDYGLVKI  NNNDTVTLLV  DFDNLQTQYA  KLDMDRISAS  NASQTSVKPI  KCSADLIKNG360
TFSSNFTLPA  KPPGVQDLIN  NGYSKVDAGK  LVDVESEEVS  TTIYDHNGKE  ITGLKLTVLA420
DGESNQPGSS  SIGSSSNSGS  DSDSGDDDNA  AGIVAIPVGL  ATIAATLFDN  VSLGLYYTSQ480
MFSSLQDYTS  VVGRLTSSKS  DRTTNGAGYL  PEPSVFFSVR  YHMFEEVLII  LNMFMAALEA540
LKFDLTLQLK  550

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH72(19-331)

MIPTYGRILA  AACALATTAS  AVTPIEVKGK  DFVNSKTGDR  FQILGVDYQP  GGTNAVDGKS60
DPLSDREACL  RDAALMQQLG  VNTIRIYNLS  PKLNHDECVS  IFNAAGIYMI  LDVNSPLYPG120
YIDRTAPWTT  YTKDYYTQVF  GIIEAFKDYP  NTLAFFAGNE  VINEDSVEQV  PQYIRAVQRD180
MKEYISKHLD  REIPVGYSAA  DVRPILEDTL  NYFMCEDEDY  PNSSSDFFGL  NSYSWCGDAS240
YKSAGYDVLT  EMMSEATIPV  FFSEYGCNEV  QPRKFTEVQA  IYGEEMTQTF  SGGLVYEYTQ300
EENDYGLVKI  NNNDTVTLLV  DFDNLQTQYA  KLDMDRISAS  NASQTSVKPI  KCSADLIKNG360
TFSSNFTLPA  KPPGVQDLIN  NGYSKVDAGK  LVDVESEEVS  TTIYDHNGKE  ITGLKLTVLA420
DGESNQPGSS  SIGSSSNSGS  DSDSGDDDNA  AGIVAIPVGL  ATIAATLFDN  VSLGLYYTSQ480
MFSSLQDYTS  VVGRLTSSKS  DRTTNGAGYL  PEPSVFFSVR  YHMFEEVLII  LNMFMAALEA540
LKFDLTLQLK  550

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help