CAZyme3D

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Entry ID

Information for CAZyme ID: DAC80243.1

Basic Information

GenBank IDDAC80243.1
FamilyCBM48, CE0, GH10, GH62
Sequence Length1077
UniProt IDA0A7X8EZ76(99.8,100)Download
Average pLDDT?88.08
CAZy50 ID11196
CAZy50 RepYes, DAC80243.1
Structure ClusterSC_GH10_clus164, SC_GH62_clus10
EC Number(s)3.1.1.73 | 3.2.1.55 | 3.2.1.8
Substrates(s)arabinan | xylan

Taxonomy

Tax ID1263854
Kingdom
Phylum
Class
Order
Family
Genus
Speciesanaerobic digester metagenome

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEHKLFTMVL  VVVMAGGTCL  AQADGSAAED  FKPTSTNQPG  RQYPQVNSEG  RVRARIEAPQ60
AHTVLLDIGG  VRYPMTQGED  GAWIGDSRPQ  DEGFHYYQLV  IDGARVPDPG  SLYFFGANRW120
GSGVEVPAHD  QDFYAIKDVP  HGRVQKILFP  SGSTSTIRRA  FVYTPPDYGK  DLSKRYPVLY180
LQHGWGEDET  GWANQGRVNL  IMDNLIAEGK  ARPFIIVMTY  GMTNEIRFGG  IREFDIRPFQ240
TVLVDELIPY  IDANFRTRSD  QPHRAMAGLS  MGGMETRLIT  MNNLDLFSHI  GLFSGGTISA300
SDITDRDVFK  QKIKLVFVSC  GSRENPGRFR  PAVDSLQQAG  ISAVSYVSPD  TAHEWQTWRR360
SFYQFAQLLF  QDQPVAAVPA  RTEAVTNPAD  AAAAAEKQPT  LKVPFETPLK  WISSDVLIRP420
VSDERHNIVS  IKDPTIVRYN  DLWHVYATVY  STTARTWTMA  YLNFKDWSDA  PNAKLHFVDE480
NPNLRGYKCA  PHLFYFTPHE  KWYLVFQSQP  PQYCTTDDIS  KPETWSAPQN  FFDRMPASMP540
RLPIDYHVIC  DDTHAYLFFT  GDDGNFYRSR  TRIEDFPKGM  SDPEIAIRDH  RNNLFEGSIT600
YKIKGTDLYL  TLIEALSPAR  YYRAWISDRL  DGQWIPVPGA  DSWNSPFAGI  NNVRFADGVE660
PWTRDISHGE  LIRDGYDEKM  ILDLDNLQFL  YQGRAVDSGG  RYELLPYQLG  LLTLDRPQSV720
KDDAQMTASD  TELPALKEVF  EDYFLIGGAF  NRNLVMGRDP  QAAEIAIKHY  NTATSENDMK780
WSLIHPQPGQ  YNWEPADRFI  EFCETHHMAP  IGHALVWHSQ  VPRWVFSDES  GNPLSREALL840
ARMKEHITAV  VGRYKGRIKG  WDVVNEALND  NGTLRNSQWL  RIIGEGKPEQ  QYDHIAKAFE900
YAHAADPDVE  LYYNDYNLST  SRAKADGAAA  IVRHLQSKGI  RIDGVGMQMH  AGLTWPEVDD960
LEYAIKTLSA  TGVKVMVTEL  DIRTRTRGPH  GAEITQINRR  TTDDPESALA  EIQQKLADKY1020
AEIFSVLVKH  KDIIPRVTFW  GVYDATSWIG  GSPLLFDSHY  EPKQAFHAVV  RVVQEKK1077

Predicted 3D structure by AlphaFold2 with pLDDT = 88.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEHKLFTMVL  VVVMAGGTCL  AQADGSAAED  FKPTSTNQPG  RQYPQVNSEG  RVRARIEAPQ60
AHTVLLDIGG  VRYPMTQGED  GAWIGDSRPQ  DEGFHYYQLV  IDGARVPDPG  SLYFFGANRW120
GSGVEVPAHD  QDFYAIKDVP  HGRVQKILFP  SGSTSTIRRA  FVYTPPDYGK  DLSKRYPVLY180
LQHGWGEDET  GWANQGRVNL  IMDNLIAEGK  ARPFIIVMTY  GMTNEIRFGG  IREFDIRPFQ240
TVLVDELIPY  IDANFRTRSD  QPHRAMAGLS  MGGMETRLIT  MNNLDLFSHI  GLFSGGTISA300
SDITDRDVFK  QKIKLVFVSC  GSRENPGRFR  PAVDSLQQAG  ISAVSYVSPD  TAHEWQTWRR360
SFYQFAQLLF  QDQPVAAVPA  RTEAVTNPAD  AAAAAEKQPT  LKVPFETPLK  WISSDVLIRP420
VSDERHNIVS  IKDPTIVRYN  DLWHVYATVY  STTARTWTMA  YLNFKDWSDA  PNAKLHFVDE480
NPNLRGYKCA  PHLFYFTPHE  KWYLVFQSQP  PQYCTTDDIS  KPETWSAPQN  FFDRMPASMP540
RLPIDYHVIC  DDTHAYLFFT  GDDGNFYRSR  TRIEDFPKGM  SDPEIAIRDH  RNNLFEGSIT600
YKIKGTDLYL  TLIEALSPAR  YYRAWISDRL  DGQWIPVPGA  DSWNSPFAGI  NNVRFADGVE660
PWTRDISHGE  LIRDGYDEKM  ILDLDNLQFL  YQGRAVDSGG  RYELLPYQLG  LLTLDRPQSV720
KDDAQMTASD  TELPALKEVF  EDYFLIGGAF  NRNLVMGRDP  QAAEIAIKHY  NTATSENDMK780
WSLIHPQPGQ  YNWEPADRFI  EFCETHHMAP  IGHALVWHSQ  VPRWVFSDES  GNPLSREALL840
ARMKEHITAV  VGRYKGRIKG  WDVVNEALND  NGTLRNSQWL  RIIGEGKPEQ  QYDHIAKAFE900
YAHAADPDVE  LYYNDYNLST  SRAKADGAAA  IVRHLQSKGI  RIDGVGMQMH  AGLTWPEVDD960
LEYAIKTLSA  TGVKVMVTEL  DIRTRTRGPH  GAEITQINRR  TTDDPESALA  EIQQKLADKY1020
AEIFSVLVKH  KDIIPRVTFW  GVYDATSWIG  GSPLLFDSHY  EPKQAFHAVV  RVVQEKK1077

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE1(153-366)+GH62(407-683)+GH10(736-1071)

MEHKLFTMVF  VVVMAGGTCL  AQADGSAAED  FKPTSTNQPG  RQYPQVNSEG  RVRARIEAPQ60
AHTVLLDIGG  VRYPMTQGED  GAWIGDSRPQ  DEGFHYYQLV  IDGARVPDPG  SLYFFGANRW120
GSGVEVPAHD  QDFYAIKDVP  HGRVQKILFP  SGSTSTIRRA  FVYTPPDYGK  DLSKRYPVLY180
LQHGWGEDET  GWANQGRVNL  IMDNLIAEGK  ARPFIIVMTY  GMTNEIRFGG  IREFDIRPFQ240
TVLVDELIPY  IDANFRTRSD  QPHRAMAGLS  MGRMETRLIT  MNNLDLFSHI  GLFSGGTISA300
SDITDRDVFK  QKIKLVFVSC  GSRENPGRFR  PAVDSLQQAG  ISAVSYVSPD  TAHEWQTWRR360
SFYQFAQLLF  QDQPVAAVPA  RTEAVTNPAD  AAAAAEKQPT  LKVPFETPLK  WISSDVLIRP420
VSDERHNIVS  IKDPTIVRYN  DLWHVYATVY  STTARTWTMA  YLNFKDWSDA  PNAKLHFVDE480
NPNLRGYKCA  PHLFYFTPHE  KWYLVFQSQP  PQYCTTDDIS  KPETWSAPQN  FFDRMPASMP540
RLPIDYHVIC  DDTHAYLFFT  GDDGNFYRSR  TRIEDFPKGM  SDPEIAIRDH  RNNLFEGSIT600
YKIKGTDLYL  TLIEALSPAR  YYRAWISDRL  DGQWIPVPGA  DSWNSPFAGI  NNVRFADGVE660
PWTRDISHGE  LIRDGYDEKM  ILDLDNLQFL  YQGRAVDSGG  RYELLPYQLG  LLTLDRPQSV720
KDDAQMTASD  TELPALKEVF  EDYFLIGGAF  NRNLVMGRDP  QAAEIAIKHY  NTATSENDMK780
WSLIHPQPGQ  YNWEPADRFI  EFCETHHMAP  IGHALVWHSQ  VPRWVFSDES  GNPLSREALL840
ARMKEHITAV  VGRYKGRIKG  WDVVNEALND  NGTLRNSQWL  RIIGEGKPEQ  QYDHIAKAFE900
YAHAADPDVE  LYYNDYNLST  SRAKADGAAA  IVRHLQSKGI  RIDGVGMQMH  AGLTWPEVDD960
LEYAIKTLSA  TGVKVMVTEL  DIRTRTRGPH  GAEITQINRR  TTDDPESALA  EIQQKLADKY1020
AEIFSVLVKH  KDIIPRVTFW  GVYDATSWIG  GSPLLFDSHY  EPKQAFHAVV  RVVQEKK1077

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help