CAZyme3D

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Entry ID

Information for CAZyme ID: CZS79851.1

Basic Information

GenBank IDCZS79851.1
FamilyGH5_15
Sequence Length433
UniProt IDI1RVI7(100,100)Download
Average pLDDT?89.95
CAZy50 ID84604
CAZy50 RepYes, CZS79851.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5518
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderHypocreales
FamilyNectriaceae
GenusFusarium
SpeciesFusarium graminearum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHFSQLASLA  LVGSATAWLP  HERDLASFNQ  TARFEQLGKR  FKPNLGSGIT  KIRGVNFGGW60
LVCEKWLQED  TWANKLQCGN  SLSEFDCMND  HYKGSNRETG  NQRFEEHWKT  WINPDTVQSV120
HDVGLNTIRI  PIGYWSYTAI  VDKASEPFAD  GDRMLPYLDA  VVKKAADLGI  YVIMDLHGAP180
GGQQEDVFTG  QNNKPAGFYN  DYNFGRAEKW  LAWMTNRIHT  NPAYSTVGMI  EVLNEPVSRH240
DGGNRYPAPG  QDPGLIQKYY  PAALKAVRDT  ESGLKVSNDK  KLHVQFMSSK  WDSGDARTQS300
SIANDALTAF  DDHNYIGFAL  NDNQNSNGDA  YKLMHSACTD  SRLVKGQDFM  LTGEWSMTSN360
YDWKDKEFFN  KFFTAQQQLY  EVPGMAGWVY  WTWKTETNDP  RWTYSYATYL  KYIPTDAVGL420
QNNVYRDVCA  GYR433

Predicted 3D structure by AlphaFold2 with pLDDT = 89.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHFSQLASLA  LVGSATAWLP  HERDLASFNQ  TARFEQLGKR  FKPNLGSGIT  KIRGVNFGGW60
LVCEKWLQED  TWANKLQCGN  SLSEFDCMND  HYKGSNRETG  NQRFEEHWKT  WINPDTVQSV120
HDVGLNTIRI  PIGYWSYTAI  VDKASEPFAD  GDRMLPYLDA  VVKKAADLGI  YVIMDLHGAP180
GGQQEDVFTG  QNNKPAGFYN  DYNFGRAEKW  LAWMTNRIHT  NPAYSTVGMI  EVLNEPVSRH240
DGGNRYPAPG  QDPGLIQKYY  PAALKAVRDT  ESGLKVSNDK  KLHVQFMSSK  WDSGDARTQS300
SIANDALTAF  DDHNYIGFAL  NDNQNSNGDA  YKLMHSACTD  SRLVKGQDFM  LTGEWSMTSN360
YDWKDKEFFN  KFFTAQQQLY  EVPGMAGWVY  WTWKTETNDP  RWTYSYATYL  KYIPTDAVGL420
QNNVYRDVCA  GYR433

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_15(98-404)

MHFSQLASLA  LVGSATAWLP  HERDLASFNQ  TARFEQLGKR  FKPNLGSGIT  KIRGVNFGGW60
LVCEKWLQED  TWANKLQCGN  SLSEFDCMND  HYKGSNRETG  NQRFEEHWKT  WINPDTVQSV120
HDVGLNTIRI  PIGYWSYTAI  VDKASEPFAD  GDRMLPYLDA  VVKKAADLGI  YVIMDLHGAP180
GGQQEDVFTG  QNNKPAGFYN  DYNFGRAEKW  LAWMTNRIHT  NPAYSTVGMI  EVLNEPVSRH240
DGGNRYPAPG  QDPGLIQKYY  PAALKAVRDT  ESGLKVSNDK  KLHVQFMSSK  WDSGDARTQS300
SIANDALTAF  DDHNYIGFAL  NDNQNSNGDA  YKLMHSACTD  SRLVKGQDFM  LTGEWSMTSN360
YDWKDKEFFN  KFFTAQQQLY  EVPGMAGWVY  WTWKTETNDP  RWTYSYATYL  KYIPTDAVGL420
QNNVYRDVCA  GYR433

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help