CAZyme3D

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Entry ID

Information for CAZyme ID: CUU45596.1

Basic Information

GenBank IDCUU45596.1
FamilyCE4
Sequence Length371
UniProt IDA0A1W7LL27(100,100)Download
Average pLDDT?78.21
CAZy50 ID118822
CAZy50 RepYes, CUU45596.1
Structure ClusterSC_CE4_clus32
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1520
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium beijerinckii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSDDINNSKN  YSNETSKIAE  VKEAGETYEV  VKNGENSEID  DNSKHNEDNS  EINDISDNIR60
PFEIDEVGEE  SFDGIKKRKF  AILLTIIAVA  IIIGIAIAVQ  KSVTNKQTAE  ALNANGNPYS120
EGDKNQTDSD  VYNSARSSEV  EDVAFIEKYL  NQQMKGQMPD  GADGKKVVYL  TFDDGPSETV180
TPKVLDTLKA  ENVHATFFLV  GKAIDESETN  KNIVKRELAE  GNAIGNHTYS  HNYGYLYPNG240
KINLENCMSD  FEKTNQSLKN  ILGQDFSTRA  VRFPGGQMTW  DKKDPSGADA  MDKALHEKDY300
HQIDWNSLSQ  DAEGAHKNAE  QLKQEVIKTV  SGREKAIILM  HDTYGKEETA  KALPEIIKYL360
KQQEYEFKIM  K371

Predicted 3D structure by AlphaFold2 with pLDDT = 78.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSDDINNSKN  YSNETSKIAE  VKEAGETYEV  VKNGENSEID  DNSKHNEDNS  EINDISDNIR60
PFEIDEVGEE  SFDGIKKRKF  AILLTIIAVA  IIIGIAIAVQ  KSVTNKQTAE  ALNANGNPYS120
EGDKNQTDSD  VYNSARSSEV  EDVAFIEKYL  NQQMKGQMPD  GADGKKVVYL  TFDDGPSETV180
TPKVLDTLKA  ENVHATFFLV  GKAIDESETN  KNIVKRELAE  GNAIGNHTYS  HNYGYLYPNG240
KINLENCMSD  FEKTNQSLKN  ILGQDFSTRA  VRFPGGQMTW  DKKDPSGADA  MDKALHEKDY300
HQIDWNSLSQ  DAEGAHKNAE  QLKQEVIKTV  SGREKAIILM  HDTYGKEETA  KALPEIIKYL360
KQQEYEFKIM  K371

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(163-279)

MSDDINNSKN  YSNETSKIAE  VKEAGETYEV  VKNGENSEID  DNSKHNEDNS  EINDISDNIR60
PFEIDEVGEE  SFDGIKKRKF  AILLTIIAVA  IIIGIAIAVQ  KSVTNKQTAE  ALNANGNPYS120
EGDKNQTDSD  VYNSARSSEV  EDVAFIEKYL  NQQMKGQMPD  GADGKKVVYL  TFDDGPSETV180
TPKVLDTLKA  ENVHATFFLV  GKAIDESETN  KNIVKRELAE  GNAIGNHTYS  HNYGYLYPNG240
KINLENCMSD  FEKTNQSLKN  ILGQDFSTRA  VRFPGGQMTW  DKKDPSGADA  MDKALHEKDY300
HQIDWNSLSQ  DAEGAHKNAE  QLKQEVIKTV  SGREKAIILM  HDTYGKEETA  KALPEIIKYL360
KQQEYEFKIM  K371

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help