CAZyme3D

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Entry ID

Information for CAZyme ID: CUI16004.1

Basic Information

GenBank IDCUI16004.1
FamilyGT2
Sequence Length379
UniProt IDA0A0U5JB43(100,100)Download
Average pLDDT?94.16
CAZy50 ID112759
CAZy50 RepYes, CUI16004.1
Structure ClusterSC_GT2_clus453
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID389348
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia naegleriophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTHPPSPLIS  VVIPLYNQAP  FLQASLSSVQ  AQTYTHLEII  LVNDGSTDET  ESICLSFTKQ60
DPRIRYLAQP  NQGPSAARNA  GIAASKGSYI  CLLDGDDLMD  PERIAKQLAA  FESDPSIDIV120
YTALRLIDLE  GNPIGEMHGE  EIASENFLVQ  LLFRNVIPGP  STIMAKRMCL  AENPYNEAFV180
HAEDYELMTR  LAHLYRFKYL  DLPLTSYRRH  GQNLSNDLTA  HRLAELRVIN  QYPPNHIESI240
VDKTSLRQEE  KELLKGKILF  NQGHFKEALS  FFNSLSTSIA  LFYAGNCHFK  LNNLAAAYQA300
YEQALALDDT  NAACQNNLGT  LLALQAKWDA  AQIRFEKALE  LRPGYLDATD  NLAHLKASSF360
PGRMTWRELR  KDLVPYQNL379

Predicted 3D structure by AlphaFold2 with pLDDT = 94.16 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTHPPSPLIS  VVIPLYNQAP  FLQASLSSVQ  AQTYTHLEII  LVNDGSTDET  ESICLSFTKQ60
DPRIRYLAQP  NQGPSAARNA  GIAASKGSYI  CLLDGDDLMD  PERIAKQLAA  FESDPSIDIV120
YTALRLIDLE  GNPIGEMHGE  EIASENFLVQ  LLFRNVIPGP  STIMAKRMCL  AENPYNEAFV180
HAEDYELMTR  LAHLYRFKYL  DLPLTSYRRH  GQNLSNDLTA  HRLAELRVIN  QYPPNHIESI240
VDKTSLRQEE  KELLKGKILF  NQGHFKEALS  FFNSLSTSIA  LFYAGNCHFK  LNNLAAAYQA300
YEQALALDDT  NAACQNNLGT  LLALQAKWDA  AQIRFEKALE  LRPGYLDATD  NLAHLKASSF360
PGRMTWRELR  KDLVPYQNL379

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(10-139)

MTHPPSPLIS  VVIPLYNQAP  FLQASLSSVQ  AQTYTHLEII  LVNDGSTDET  ESICLSFTKQ60
DPRIRYLAQP  NQGPSAARNA  GIAASKGSYI  CLLDGDDLMD  PERIAKQLAA  FESDPSIDIV120
YTALRLIDLE  GNPIGEMHGE  EIASENFLVQ  LLFRNVIPGP  STIMAKRMCL  AENPYNEAFV180
HAEDYELMTR  LAHLYRFKYL  DLPLTSYRRH  GQNLSNDLTA  HRLAELRVIN  QYPPNHIESI240
VDKTSLRQEE  KELLKGKILF  NQGHFKEALS  FFNSLSTSIA  LFYAGNCHFK  LNNLAAAYQA300
YEQALALDDT  NAACQNNLGT  LLALQAKWDA  AQIRFEKALE  LRPGYLDATD  NLAHLKASSF360
PGRMTWRELR  KDLVPYQNL379

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help