CAZyme3D

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Entry ID

Information for CAZyme ID: CUI15977.1

Basic Information

GenBank IDCUI15977.1
FamilyGT7
Sequence Length231
UniProt IDA0A0U5J7B8(100,100)Download
Average pLDDT?94.28
CAZy50 ID175993
CAZy50 RepYes, CUI15977.1
Structure ClusterSC_GT7_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID389348
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia naegleriophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIESCTTSTA  MHKMALIIPY  RNREEHLAEF  LHSFPPKMKE  LCPAVDYHIF  IIEQTPGKSF60
NRGKLLNVGF  ILTQGEFDYF  CFHDVDMLPT  SADYSFPNVP  THLAADVSQF  REWIGKGLAY120
KNYFGGVVLF  NKADFERING  YSNQYWGYGI  EDDDLIVRVV  ESGLSWIRRP  GIYESLSHDY180
SGGTPEHHAN  KARFINILKE  LESDPSGLSD  LDFKVIKKET  FSNYSHYLID  I231

Predicted 3D structure by AlphaFold2 with pLDDT = 94.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIESCTTSTA  MHKMALIIPY  RNREEHLAEF  LHSFPPKMKE  LCPAVDYHIF  IIEQTPGKSF60
NRGKLLNVGF  ILTQGEFDYF  CFHDVDMLPT  SADYSFPNVP  THLAADVSQF  REWIGKGLAY120
KNYFGGVVLF  NKADFERING  YSNQYWGYGI  EDDDLIVRVV  ESGLSWIRRP  GIYESLSHDY180
SGGTPEHHAN  KARFINILKE  LESDPSGLSD  LDFKVIKKET  FSNYSHYLID  I231

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT7(7-231)

MIESCTTSTA  MHKMALIIPY  RNREEHLAEF  LHSFPPKMKE  LCPAVDYHIF  IIEQTPGKSF60
NRGKLLNVGF  ILTQGEFDYF  CFHDVDMLPT  SADYSFPNVP  THLAADVSQF  REWIGKGLAY120
KNYFGGVVLF  NKADFERING  YSNQYWGYGI  EDDDLIVRVV  ESGLSWIRRP  GIYESLSHDY180
SGGTPEHHAN  KARFINILKE  LESDPSGLSD  LDFKVIKKET  FSNYSHYLID  I231

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help