CAZyme3D

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Entry ID

Information for CAZyme ID: CUH74573.1

Basic Information

GenBank IDCUH74573.1
FamilyGH56
Sequence Length394
UniProt IDA0A0S4JYH2(100,100)Download
Average pLDDT?94.15
CAZy50 ID102283
CAZy50 RepYes, CUH74573.1
Structure ClusterSC_GH56_clus2
EC Number(s)3.2.1.35
Substrates(s)host glycan

Taxonomy

Tax ID6928
KingdomEukaryota
PhylumArthropoda
ClassArachnida
OrderAraneae
FamilyCtenidae
GenusCupiennius
SpeciesCupiennius salei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

METRIIFLHL  LAIVSGFKIY  WNVPTFQCTH  NYKIDYVKLL  STYGIQVNDG  GKFQGNQVTI60
FYETQLGLYP  RILKSGKMEN  GGIPQRGNFE  KHLEKASTDL  QKVIPWKEFS  GLGVIDWEAW120
RPTWEFNWEP  LRIYQTESIK  RAKELHPTAN  DSAVKEIAER  QWEDSAKLYM  LETLRLAKKL180
RPQAPWCYYL  FPDCYNYVGK  KPKDFQCSAS  IRKGNDKLSW  LWKDSTALCP  SIYVYESQLD240
RYSFEQRTWR  DNEKLREALR  VATRTSKIYP  YVNYFDKELI  PEQEVWRMLA  QAAAVGGSGA300
VIWGSSAAVA  SEELCKSLKQ  YIIETLGPAA  EKVAWRSDLC  SKEICNNQGR  CTFPDDDYAN360
AWKLFTDDTV  KFYAGNITCR  CSENYSGRFC  EKKN394

Predicted 3D structure by AlphaFold2 with pLDDT = 94.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

METRIIFLHL  LAIVSGFKIY  WNVPTFQCTH  NYKIDYVKLL  STYGIQVNDG  GKFQGNQVTI60
FYETQLGLYP  RILKSGKMEN  GGIPQRGNFE  KHLEKASTDL  QKVIPWKEFS  GLGVIDWEAW120
RPTWEFNWEP  LRIYQTESIK  RAKELHPTAN  DSAVKEIAER  QWEDSAKLYM  LETLRLAKKL180
RPQAPWCYYL  FPDCYNYVGK  KPKDFQCSAS  IRKGNDKLSW  LWKDSTALCP  SIYVYESQLD240
RYSFEQRTWR  DNEKLREALR  VATRTSKIYP  YVNYFDKELI  PEQEVWRMLA  QAAAVGGSGA300
VIWGSSAAVA  SEELCKSLKQ  YIIETLGPAA  EKVAWRSDLC  SKEICNNQGR  CTFPDDDYAN360
AWKLFTDDTV  KFYAGNITCR  CSENYSGRFC  EKKN394

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH56(16-334)

METRIIFLHL  LAIVSGFKIY  WNVPTFQCTH  NYKIDYVKLL  STYGIQVNDG  GKFQGNQVTI60
FYETQLGLYP  RILKSGKMEN  GGIPQRGNFE  KHLEKASTDL  QKVIPWKEFS  GLGVIDWEAW120
RPTWEFNWEP  LRIYQTESIK  RAKELHPTAN  DSAVKEIAER  QWEDSAKLYM  LETLRLAKKL180
RPQAPWCYYL  FPDCYNYVGK  KPKDFQCSAS  IRKGNDKLSW  LWKDSTALCP  SIYVYESQLD240
RYSFEQRTWR  DNEKLREALR  VATRTSKIYP  YVNYFDKELI  PEQEVWRMLA  QAAAVGGSGA300
VIWGSSAAVA  SEELCKSLKQ  YIIETLGPAA  EKVAWRSDLC  SKEICNNQGR  CTFPDDDYAN360
AWKLFTDDTV  KFYAGNITCR  CSENYSGRFC  EKKN394

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help