CAZyme3D

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Entry ID

Information for CAZyme ID: CRI06683.1

Basic Information

GenBank IDCRI06683.1
FamilyGH23
Sequence Length373
UniProt IDA0A1Z5AZ21(100,100)Download
Average pLDDT?76.03
CAZy50 ID116940
CAZy50 RepYes, CRI06683.1
Structure ClusterSC_GH23_clus502
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2751
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyCarnobacteriaceae
GenusCarnobacterium
SpeciesCarnobacterium maltaromaticum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGGFTALKIG  SFAVKHKGKI  VAGIITFIAL  FFIIFSGTPD  KSEEVGSTVG  LPEEVMRWKP60
DVERIAKKNE  IPEYVPIILA  MIMVESGGKG  SDILQSSESA  GGNQNDIKDP  IKSLEQGIGY120
LAGNVRKAKE  LGCDMWTAVG  AYNFGSNYVN  YISEHGKKHS  TKLADSYSLN  VVAPAQRKNG180
YLNAGTPYNY  PNPIAIKYNG  GILYLHSGNF  FYVDRVQQYV  DAGGGSNTAG  KGEFKLPVKL240
PTTVTSGYGV  RTDPITGSAG  EFHKGIDFAG  GGNPPIFASK  EGTVIYAQFN  TGGFGNYVAI300
QHNNGLISSY  AHLNSINVKA  GQQVKTGEQV  GAMGTTGSST  GVHLHFAISK  SLFSDYVDPS360
SYLKIKNQEG  ELK373

Predicted 3D structure by AlphaFold2 with pLDDT = 76.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGGFTALKIG  SFAVKHKGKI  VAGIITFIAL  FFIIFSGTPD  KSEEVGSTVG  LPEEVMRWKP60
DVERIAKKNE  IPEYVPIILA  MIMVESGGKG  SDILQSSESA  GGNQNDIKDP  IKSLEQGIGY120
LAGNVRKAKE  LGCDMWTAVG  AYNFGSNYVN  YISEHGKKHS  TKLADSYSLN  VVAPAQRKNG180
YLNAGTPYNY  PNPIAIKYNG  GILYLHSGNF  FYVDRVQQYV  DAGGGSNTAG  KGEFKLPVKL240
PTTVTSGYGV  RTDPITGSAG  EFHKGIDFAG  GGNPPIFASK  EGTVIYAQFN  TGGFGNYVAI300
QHNNGLISSY  AHLNSINVKA  GQQVKTGEQV  GAMGTTGSST  GVHLHFAISK  SLFSDYVDPS360
SYLKIKNQEG  ELK373

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(68-179)

MGGFTALKIG  SFAVKHKGKI  VAGIITFIAL  FFIIFSGTPD  KSEEVGSTVG  LPEEVMRWKP60
DVERIAKKNE  IPEYVPIILA  MIMVESGGKG  SDILQSSESA  GGNQNDIKDP  IKSLEQGIGY120
LAGNVRKAKE  LGCDMWTAVG  AYNFGSNYVN  YISEHGKKHS  TKLADSYSLN  VVAPAQRKNG180
YLNAGTPYNY  PNPIAIKYNG  GILYLHSGNF  FYVDRVQQYV  DAGGGSNTAG  KGEFKLPVKL240
PTTVTSGYGV  RTDPITGSAG  EFHKGIDFAG  GGNPPIFASK  EGTVIYAQFN  TGGFGNYVAI300
QHNNGLISSY  AHLNSINVKA  GQQVKTGEQV  GAMGTTGSST  GVHLHFAISK  SLFSDYVDPS360
SYLKIKNQEG  ELK373

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help