CAZyme3D

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Entry ID

Information for CAZyme ID: CQR57255.1

Basic Information

GenBank IDCQR57255.1
FamilyGH52
Sequence Length768
UniProt IDA0A0E4CY93(100,100)Download
Average pLDDT?91.31
CAZy50 ID30769
CAZy50 RepYes, CQR57255.1
Structure ClusterSC_GH52_clus2
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1073571
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus riograndensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNMNQGSEVT  QETKKAKLKF  QKGVFMTKTN  LFYNVQHSPI  GAFASFTLGF  KGKNGGLGLE60
LGKPADQNVY  VGFQSGDGET  YDVLPFFERV  EDAGARYDIE  KADETAKELQ  EVFPSSPGGN120
DRDKPSGWYQ  PSRIVLRPYE  DGKITRTLRP  ATDTWNAGDL  TFTIYSPVRS  VPDPAAADEE180
ELKAAILPAV  FAELTLDNTQ  GTFTRKGFFG  YEGGDAYSSM  RRLRDTSNGE  FEGVGQGRLT240
AIACKDEGVQ  TALGFTMEKI  LEAKLEHNLA  FGLGGTGAIM  MEVPPGEKRT  YRFAICFYRG300
GLVTAGIDAS  YAYTRYFKNI  EAVAGYALEH  FDELTGSCAA  GNAWIESARL  TEDQSFMLAH360
AIHSYYGSTQ  LLEADGKPLW  IVNEGEYRMM  NTLDLTADQL  FFELVMNPWT  VRNELELFVD420
RYSYEDKVVF  PGGTEEYPGG  ITFTHDVGVA  NVFSRPQYSA  YEMAGLDDCF  SYMSHEELVN480
WLCSALVYIE  QTRDREFIGH  MLPTLRACFD  SMLNRDHPES  HLRNGLMGLD  STRTEGGAEI540
TTYDSLDTSL  GQSRNNIYMA  GKCWAAYVAL  EKFFKQEGLA  ELSAAAGQQA  EKCAASIASK600
LNSEGYIPAI  INEDNTSCII  PAIEGLVFPL  FTGCEAALDP  NGRFAGYLSA  LNTHLANVLV660
PGVCLFEDGG  WKLSSTSNNS  WLSKIYLSQF  IAREILQLPW  DEAGLAADAA  HVRWLLHPEL720
SYWCWSDQIL  SGLIGGSKYY  PRGVTAILWM  LEGTGNRSLT  KIKEEISV768

Predicted 3D structure by AlphaFold2 with pLDDT = 91.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNMNQGSEVT  QETKKAKLKF  QKGVFMTKTN  LFYNVQHSPI  GAFASFTLGF  KGKNGGLGLE60
LGKPADQNVY  VGFQSGDGET  YDVLPFFERV  EDAGARYDIE  KADETAKELQ  EVFPSSPGGN120
DRDKPSGWYQ  PSRIVLRPYE  DGKITRTLRP  ATDTWNAGDL  TFTIYSPVRS  VPDPAAADEE180
ELKAAILPAV  FAELTLDNTQ  GTFTRKGFFG  YEGGDAYSSM  RRLRDTSNGE  FEGVGQGRLT240
AIACKDEGVQ  TALGFTMEKI  LEAKLEHNLA  FGLGGTGAIM  MEVPPGEKRT  YRFAICFYRG300
GLVTAGIDAS  YAYTRYFKNI  EAVAGYALEH  FDELTGSCAA  GNAWIESARL  TEDQSFMLAH360
AIHSYYGSTQ  LLEADGKPLW  IVNEGEYRMM  NTLDLTADQL  FFELVMNPWT  VRNELELFVD420
RYSYEDKVVF  PGGTEEYPGG  ITFTHDVGVA  NVFSRPQYSA  YEMAGLDDCF  SYMSHEELVN480
WLCSALVYIE  QTRDREFIGH  MLPTLRACFD  SMLNRDHPES  HLRNGLMGLD  STRTEGGAEI540
TTYDSLDTSL  GQSRNNIYMA  GKCWAAYVAL  EKFFKQEGLA  ELSAAAGQQA  EKCAASIASK600
LNSEGYIPAI  INEDNTSCII  PAIEGLVFPL  FTGCEAALDP  NGRFAGYLSA  LNTHLANVLV660
PGVCLFEDGG  WKLSSTSNNS  WLSKIYLSQF  IAREILQLPW  DEAGLAADAA  HVRWLLHPEL720
SYWCWSDQIL  SGLIGGSKYY  PRGVTAILWM  LEGTGNRSLT  KIKEEISV768

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH52(46-488)

MNMNQGSEVT  QETKKAKLKF  QKGVFMTKTN  LFYNVQHSPI  GAFASFTLGF  KGKNGGLGLE60
LGKPADQNVY  VGFQSGDGET  YDVLPFFERV  EDAGARYDIE  KADETAKELQ  EVFPSSPGGN120
DRDKPSGWYQ  PSRIVLRPYE  DGKITRTLRP  ATDTWNAGDL  TFTIYSPVRS  VPDPAAADEE180
ELKAAILPAV  FAELTLDNTQ  GTFTRKGFFG  YEGGDAYSSM  RRLRDTSNGE  FEGVGQGRLT240
AIACKDEGVQ  TALGFTMEKI  LEAKLEHNLA  FGLGGTGAIM  MEVPPGEKRT  YRFAICFYRG300
GLVTAGIDAS  YAYTRYFKNI  EAVAGYALEH  FDELTGSCAA  GNAWIESARL  TEDQSFMLAH360
AIHSYYGSTQ  LLEADGKPLW  IVNEGEYRMM  NTLDLTADQL  FFELVMNPWT  VRNELELFVD420
RYSYEDKVVF  PGGTEEYPGG  ITFTHDVGVA  NVFSRPQYSA  YEMAGLDDCF  SYMSHEELVN480
WLCSALVYIE  QTRDREFIGH  MLPTLRACFD  SMLNRDHPES  HLRNGLMGLD  STRTEGGAEI540
TTYDSLDTSL  GQSRNNIYMA  GKCWAAYVAL  EKFFKQEGLA  ELSAAAGQQA  EKCAASIASK600
LNSEGYIPAI  INEDNTSCII  PAIEGLVFPL  FTGCEAALDP  NGRFAGYLSA  LNTHLANVLV660
PGVCLFEDGG  WKLSSTSNNS  WLSKIYLSQF  IAREILQLPW  DEAGLAADAA  HVRWLLHPEL720
SYWCWSDQIL  SGLIGGSKYY  PRGVTAILWM  LEGTGNRSLT  KIKEEISV768

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help