CAZyme3D

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Entry ID

Information for CAZyme ID: CEI39863.1

Basic Information

GenBank IDCEI39863.1
FamilyCBM18, GH18
Sequence Length1087
UniProt IDA0A2L2T1G8(100,100)Download
Average pLDDT?68.83
CAZy50 ID10865
CAZy50 RepYes, CEI39863.1
Structure ClusterSC_CBM18_clus22, SC_GH18_clus20
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID56646
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderHypocreales
FamilyNectriaceae
GenusFusarium
SpeciesFusarium venenatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQGLFLQGLL  ASLASASITH  QNPAVDGPDV  LSRWLDMRSP  ENDTTSNLTS  RNYVSASPAQ60
LFGKRADEPP  GEGALLCPNG  ECADKSCCSA  KGVCGYGKGF  CDEGCQSNCD  ATAMCGELSE120
GGDIPCGLNL  CCSSGGWCGT  TEVHCVGPNK  WSLCQQGYGS  CEMIKPKTCG  EGSGTADKRM180
IGYYQANNMR  NRACNKIYPK  DIKTDSYTHL  YWAFATIDPN  SYAVKLAEAE  DEDNVRDFTA240
LKGQGRNLQT  WVAVGGYDFS  DEDKPTHKTW  ADLCADAGKR  ADFIKSAAAF  MDKYGFQGID300
LDWEYPGEPK  RGGSRADIAN  FVSLLRDMKK  AWGDKYGISL  TLAPDYWYLR  YFDVAGLAPY360
VDHFGFMAYD  LHGFWDADVK  TLDPIVRGQA  DIREIMNNTI  PLAYAGVDFN  KINFGVAWYG420
RGYTLTDPKC  QTLGCPFSGP  SSPAKCTNSA  GVMSLLEIQD  KAKNGGKTRL  LKDSAMKELV480
YEDQWVGYDD  EETIELKRKF  ANNLCFGGLM  AWSVDFEPGT  GQNSDMEPEK  STDGSCGPKH540
RGTICEGTSY  GDCCSEYSSC  GSSSLHCGTG  CVSGKCTKNG  KSTNGRCGVG  FLGATCKGTS600
YGDCCSREGW  CGSSDGHCGD  GCQSGCDKDD  DSEDEEEDND  DNPKIPALAQ  KGTTAGSSGD660
QGSDWPQELK  DDICKYKYDY  EDEGEVFKAW  FQSGALNWFT  AWLKKNGAKN  WTDKFFKDVI720
AGGKQGSSTF  DCKDLGSTTC  TGPGATPCDT  YTPPMAFYVH  VQIANMFSAF  HKLWMKNINF780
SIKQLSSGIK  EIVKEYGDPP  KDDRSMLLNM  MVGILTSGAG  LSAGSAGLAG  GITFFSGAVA840
SIAANGDLFG  DKVTVDDLND  DLENAYGTAF  SAVLNATTGY  VEDVMSGRIP  GNWEVDENEE900
DKYAETFVLT  RFIKGDWLSE  PLISKAMQTY  VTATHKKWME  FAKTRCLLPG  HKGYYYSLMW960
SGLRTKSSDP  VGKTQKLTED  VCRNKLPGCI  WHDNNCVCFG  KSTLRYPSAK  RQYDPLSRTD1020
IEEMKKIVDD  YEAALINNYE  CDNGEPSIPS  AKDFNIKNPI  QYPKCFIPFH  KLTKDEAFHC1080
DIPKDLW1087

Predicted 3D structure by AlphaFold2 with pLDDT = 68.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQGLFLQGLL  ASLASASITH  QNPAVDGPDV  LSRWLDMRSP  ENDTTSNLTS  RNYVSASPAQ60
LFGKRADEPP  GEGALLCPNG  ECADKSCCSA  KGVCGYGKGF  CDEGCQSNCD  ATAMCGELSE120
GGDIPCGLNL  CCSSGGWCGT  TEVHCVGPNK  WSLCQQGYGS  CEMIKPKTCG  EGSGTADKRM180
IGYYQANNMR  NRACNKIYPK  DIKTDSYTHL  YWAFATIDPN  SYAVKLAEAE  DEDNVRDFTA240
LKGQGRNLQT  WVAVGGYDFS  DEDKPTHKTW  ADLCADAGKR  ADFIKSAAAF  MDKYGFQGID300
LDWEYPGEPK  RGGSRADIAN  FVSLLRDMKK  AWGDKYGISL  TLAPDYWYLR  YFDVAGLAPY360
VDHFGFMAYD  LHGFWDADVK  TLDPIVRGQA  DIREIMNNTI  PLAYAGVDFN  KINFGVAWYG420
RGYTLTDPKC  QTLGCPFSGP  SSPAKCTNSA  GVMSLLEIQD  KAKNGGKTRL  LKDSAMKELV480
YEDQWVGYDD  EETIELKRKF  ANNLCFGGLM  AWSVDFEPGT  GQNSDMEPEK  STDGSCGPKH540
RGTICEGTSY  GDCCSEYSSC  GSSSLHCGTG  CVSGKCTKNG  KSTNGRCGVG  FLGATCKGTS600
YGDCCSREGW  CGSSDGHCGD  GCQSGCDKDD  DSEDEEEDND  DNPKIPALAQ  KGTTAGSSGD660
QGSDWPQELK  DDICKYKYDY  EDEGEVFKAW  FQSGALNWFT  AWLKKNGAKN  WTDKFFKDVI720
AGGKQGSSTF  DCKDLGSTTC  TGPGATPCDT  YTPPMAFYVH  VQIANMFSAF  HKLWMKNINF780
SIKQLSSGIK  EIVKEYGDPP  KDDRSMLLNM  MVGILTSGAG  LSAGSAGLAG  GITFFSGAVA840
SIAANGDLFG  DKVTVDDLND  DLENAYGTAF  SAVLNATTGY  VEDVMSGRIP  GNWEVDENEE900
DKYAETFVLT  RFIKGDWLSE  PLISKAMQTY  VTATHKKWME  FAKTRCLLPG  HKGYYYSLMW960
SGLRTKSSDP  VGKTQKLTED  VCRNKLPGCI  WHDNNCVCFG  KSTLRYPSAK  RQYDPLSRTD1020
IEEMKKIVDD  YEAALINNYE  CDNGEPSIPS  AKDFNIKNPI  QYPKCFIPFH  KLTKDEAFHC1080
DIPKDLW1087

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(79-109)+CBM18(115-147)+GH18(177-519)+CBM18(586-626)

MQGLFLQGLL  ASLASASITH  QNPAVDGPDV  LSRWLDMRSP  ENDTTSNLTS  RNYVSASPAQ60
LFGKRADEPP  GEGALLCPNG  ECADKSCCSA  KGVCGYGKGF  CDEGCQSNCD  ATAMCGELSE120
GGDIPCGLNL  CCSSGGWCGT  TEVHCVGPNK  WSLCQQGYGS  CEMIKPKTCG  EGSGTADKRM180
IGYYQANNMR  NRACNKIYPK  DIKTDSYTHL  YWAFATIDPN  SYAVKLAEAE  DEDNVRDFTA240
LKGQGRNLQT  WVAVGGYDFS  DEDKPTHKTW  ADLCADAGKR  ADFIKSAAAF  MDKYGFQGID300
LDWEYPGEPK  RGGSRADIAN  FVSLLRDMKK  AWGDKYGISL  TLAPDYWYLR  YFDVAGLAPY360
VDHFGFMAYD  LHGFWDADVK  TLDPIVRGQA  DIREIMNNTI  PLAYAGVDFN  KINFGVAWYG420
RGYTLTDPKC  QTLGCPFSGP  SSPAKCTNSA  GVMSLLEIQD  KAKNGGKTRL  LKDSAMKELV480
YEDQWVGYDD  EETIELKRKF  ANNLCFGGLM  AWSVDFEPGT  GQNSDMEPEK  STDGSCGPKH540
RGTICEGTSY  GDCCSEYSSC  GSSSLHCGTG  CVSGKCTKNG  KSTNGRCGVG  FLGATCKGTS600
YGDCCSREGW  CGSSDGHCGD  GCQSGCDKDD  DSEDEEEDND  DNPKIPALAQ  KGTTAGSSGD660
QGSDWPQELK  DDICKYKYDY  EDEGEVFKAW  FQSGALNWFT  AWLKKNGAKN  WTDKFFKDVI720
AGGKQGSSTF  DCKDLGSTTC  TGPGATPCDT  YTPPMAFYVH  VQIANMFSAF  HKLWMKNINF780
SIKQLSSGIK  EIVKEYGDPP  KDDRSMLLNM  MVGILTSGAG  LSAGSAGLAG  GITFFSGAVA840
SIAANGDLFG  DKVTVDDLND  DLENAYGTAF  SAVLNATTGY  VEDVMSGRIP  GNWEVDENEE900
DKYAETFVLT  RFIKGDWLSE  PLISKAMQTY  VTATHKKWME  FAKTRCLLPG  HKGYYYSLMW960
SGLRTKSSDP  VGKTQKLTED  VCRNKLPGCI  WHDNNCVCFG  KSTLRYPSAK  RQYDPLSRTD1020
IEEMKKIVDD  YEAALINNYE  CDNGEPSIPS  AKDFNIKNPI  QYPKCFIPFH  KLTKDEAFHC1080
DIPKDLW1087

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help