CAZyme3D

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Entry ID

Information for CAZyme ID: CEF68676.1

Basic Information

GenBank IDCEF68676.1
FamilyGH85
Sequence Length428
UniProt IDA0A090LFX6(100,100)Download
Average pLDDT?87.90
CAZy50 ID86438
CAZy50 RepYes, CEF68676.1
Structure ClusterSC_GH85_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34506
KingdomEukaryota
PhylumNematoda
ClassChromadorea
OrderRhabditida
FamilyStrongyloididae
GenusStrongyloides
SpeciesStrongyloides ratti

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIDMFNFGGI  RYEGCTLNDS  KEDPFIITHW  WNIDSFCYFS  HHFISIPPKV  WIDQGHAHGV60
KVLGTLITEY  KDGFLLCNEL  FTFNSNIDNL  IKCLVKLTKL  CNFDGWLINI  ENPLIDGKVD120
QMWSFLEVLT  SELKKLDEGN  IVIWYDSVID  TGELKWQNEL  NEHNVQFFDV  CDGIYLNYCW180
DGKKLDRSME  LATPKKCKNV  YVGIDIFGRK  TFGGGGFNAN  VAMEEIKKRN  MSTVLFALGW240
LCEAHQNTCI  FRQNEKFFEL  IKHYLPSRSI  KKLPIKTNFK  NGFDIECNKT  FCYANSDIQP300
LIHDKNNIFR  ETPKMKPSGG  FEITFKNHEK  FGKYVVWYFE  FNESENKTFN  CEISYEKVKG360
KGELIVNFTK  ESGETINLEK  RDVTCDNILK  VMFNAAPASL  KSVVLSCEQG  EDSETTFLVK420
GFSLSLNN428

Predicted 3D structure by AlphaFold2 with pLDDT = 87.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIDMFNFGGI  RYEGCTLNDS  KEDPFIITHW  WNIDSFCYFS  HHFISIPPKV  WIDQGHAHGV60
KVLGTLITEY  KDGFLLCNEL  FTFNSNIDNL  IKCLVKLTKL  CNFDGWLINI  ENPLIDGKVD120
QMWSFLEVLT  SELKKLDEGN  IVIWYDSVID  TGELKWQNEL  NEHNVQFFDV  CDGIYLNYCW180
DGKKLDRSME  LATPKKCKNV  YVGIDIFGRK  TFGGGGFNAN  VAMEEIKKRN  MSTVLFALGW240
LCEAHQNTCI  FRQNEKFFEL  IKHYLPSRSI  KKLPIKTNFK  NGFDIECNKT  FCYANSDIQP300
LIHDKNNIFR  ETPKMKPSGG  FEITFKNHEK  FGKYVVWYFE  FNESENKTFN  CEISYEKVKG360
KGELIVNFTK  ESGETINLEK  RDVTCDNILK  VMFNAAPASL  KSVVLSCEQG  EDSETTFLVK420
GFSLSLNN428

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH85(21-260)

MIDMFNFGGI  RYEGCTLNDS  KEDPFIITHW  WNIDSFCYFS  HHFISIPPKV  WIDQGHAHGV60
KVLGTLITEY  KDGFLLCNEL  FTFNSNIDNL  IKCLVKLTKL  CNFDGWLINI  ENPLIDGKVD120
QMWSFLEVLT  SELKKLDEGN  IVIWYDSVID  TGELKWQNEL  NEHNVQFFDV  CDGIYLNYCW180
DGKKLDRSME  LATPKKCKNV  YVGIDIFGRK  TFGGGGFNAN  VAMEEIKKRN  MSTVLFALGW240
LCEAHQNTCI  FRQNEKFFEL  IKHYLPSRSI  KKLPIKTNFK  NGFDIECNKT  FCYANSDIQP300
LIHDKNNIFR  ETPKMKPSGG  FEITFKNHEK  FGKYVVWYFE  FNESENKTFN  CEISYEKVKG360
KGELIVNFTK  ESGETINLEK  RDVTCDNILK  VMFNAAPASL  KSVVLSCEQG  EDSETTFLVK420
GFSLSLNN428

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help