CAZyme3D

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Entry ID

Information for CAZyme ID: CED70313.1

Basic Information

GenBank IDCED70313.1
FamilyCBM47
Sequence Length447
UniProt IDA0A090IM46(100,100)Download
Average pLDDT?89.67
CAZy50 ID80743
CAZy50 RepYes, CED70313.1
Structure ClusterSC_CBM47_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID80852
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio wodanis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSFFKKKPV  INEQAVNEPL  NNEIINEQAD  ETQSIDAIVE  KVIAHINAHP  MTHFRSESEG60
GPLRVNTNNK  GRFVRFSLQT  DVSFHLDTIE  IYNKDGRNIA  PGKNTIISSS  YDNDLKYSGE120
GALVGKKNGG  CNFHTQREKN  PWLIVDLGTV  RNLDEIVVYN  RSGQFYTRAL  SLKIESSWDL180
VSWQPIFDNW  SVLKNYQNEG  DISPLENALL  YAAVLEGTVA  KTLINKYRSD  NDNESALKIH240
NLVNGLVRKH  GLALGPHGFT  QTFELSSPER  KKLVFSELAL  ILKVINEDFG  APAFISSGTL300
LGIVRDGQFI  GHDDDVDICY  ISQVETEEEV  LSERIRLMEF  LKTKGFNTAF  SGIAHYWCHT360
PKGINLDIFT  GFTEEGFCSM  NPIGRREVKA  EDVLPLQKIQ  SNGVELYLPR  NPEPLLVLNY420
GPNWKTPDPL  WTFNWGKAKQ  DFQFLYL447

Predicted 3D structure by AlphaFold2 with pLDDT = 89.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFSFFKKKPV  INEQAVNEPL  NNEIINEQAD  ETQSIDAIVE  KVIAHINAHP  MTHFRSESEG60
GPLRVNTNNK  GRFVRFSLQT  DVSFHLDTIE  IYNKDGRNIA  PGKNTIISSS  YDNDLKYSGE120
GALVGKKNGG  CNFHTQREKN  PWLIVDLGTV  RNLDEIVVYN  RSGQFYTRAL  SLKIESSWDL180
VSWQPIFDNW  SVLKNYQNEG  DISPLENALL  YAAVLEGTVA  KTLINKYRSD  NDNESALKIH240
NLVNGLVRKH  GLALGPHGFT  QTFELSSPER  KKLVFSELAL  ILKVINEDFG  APAFISSGTL300
LGIVRDGQFI  GHDDDVDICY  ISQVETEEEV  LSERIRLMEF  LKTKGFNTAF  SGIAHYWCHT360
PKGINLDIFT  GFTEEGFCSM  NPIGRREVKA  EDVLPLQKIQ  SNGVELYLPR  NPEPLLVLNY420
GPNWKTPDPL  WTFNWGKAKQ  DFQFLYL447

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM47(117-186)

MFSFFKKKPV  INEQAVNEPL  NNEIINEQAD  ETQSIDAIVE  KVIAHINAHP  MTHFRSESEG60
GPLRVNTNNK  GRFVRFSLQT  DVSFHLDTIE  IYNKDGRNIA  PGKNTIISSS  YDNDLKYSGE120
GALVGKKNGG  CNFHTQREKN  PWLIVDLGTV  RNLDEIVVYN  RSGQFYTRAL  SLKIESSWDL180
VSWQPIFDNW  SVLKNYQNEG  DISPLENALL  YAAVLEGTVA  KTLINKYRSD  NDNESALKIH240
NLVNGLVRKH  GLALGPHGFT  QTFELSSPER  KKLVFSELAL  ILKVINEDFG  APAFISSGTL300
LGIVRDGQFI  GHDDDVDICY  ISQVETEEEV  LSERIRLMEF  LKTKGFNTAF  SGIAHYWCHT360
PKGINLDIFT  GFTEEGFCSM  NPIGRREVKA  EDVLPLQKIQ  SNGVELYLPR  NPEPLLVLNY420
GPNWKTPDPL  WTFNWGKAKQ  DFQFLYL447

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help