CAZyme3D

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Entry ID

Information for CAZyme ID: CDS13587.1

Basic Information

GenBank IDCDS13587.1
FamilyGT31, GT32
Sequence Length1006
UniProt IDA0A077X3L2(100,100)Download
Average pLDDT?83.88
CAZy50 ID14055
CAZy50 RepYes, CDS13587.1
Structure ClusterSC_GT31_clus2, SC_GT32_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688394
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusLichtheimia
SpeciesLichtheimia ramosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKQNGLPSFR  QRGLSSLNVP  RRYHLPLILL  RTLSLLPSLL  GAYHNTRSAY  NVPIRDSGGA60
LVLKSTQSDF  WIANFWCALA  GYWSWILTTS  MMRRWLYHYE  ISNAIVRVIT  LTVINGSISA120
FVSSQLERDQ  PIAIWMTICL  ILLVCNILKL  CFGTNPKYHR  KAEDVQSPRI  NLKSTAVKVL180
VLPLSVVTFL  TMFVALQQMD  RLQYQTSQLM  QQPFGLDHVV  SSGASTTSMV  ILILSSWSNQ240
AYERRKMLRQ  TSLKLLGQQN  VVYRFVLGQP  PSAHTQMTMG  PKIELESSSY  HDMLVVPAAD300
PDSYKSRKLY  EAMRWSKEMQ  YDYLVKTDDN  VFVRWDIVQD  ELMTLGKQKE  YWRGLVYRNM360
PPDAFGADKS  MNTDYPLPIL  PPYTSGVMYT  ISRDIVDLVV  GIETPQRFVA  ADDRNLGIWL420
FGYDISIIHD  SRIQDGDACE  ATQITKRFSD  TRLSDMTTMY  ENVVSGKAQC  IGLDTGICGV480
CYPCHDKRDD  WRAMNLACDE  FRGITMKKQP  LYDKVSGSKV  RDELQPSILG  ENDAWIIDGV540
LSQRTSVYSD  TDQWHLLYWV  CWTSDPSTFT  ERHWRALELV  WVHEPQAVIF  MITNTLPTDF600
FDEYRQYGYN  IHVVHFNKEN  LLSWNWYFGP  GTEDWLREWD  RWAEGKFFYW  HLTDYIRCLL660
LYNYGGTYMD  MDALWIRVPP  DSEMEFIGSD  YSSLISDREW  TLDDEGLYLP  QGLLRFKRGW720
KLFREMCEDA  FSAYAYDPEC  FNCHGPKAIT  TYVRQHRAAL  EMGGFTILPR  EVLYPASYLE780
INRFLLPNPL  AEHELRTKIM  VHSWNIHLFG  KMTNHLPIQE  GSIIDRVLQL  FDLDVPHTDI840
SSHAILSSSG  SRIVPMGLRG  PRSYIYRFMP  SFTALPSDAL  DMRRRALQQP  TPGRFQGLDR900
IYVRGGPPVV  EHVTITAEVA  FGSLTLDTNN  TITEHQQSLS  RSKAIELHNA  SQKDVNALLN960
DLSYSPSKLL  AANGGRDRLN  LSVKYSTGEH  DELLVDIIVV  EAEEDD1006

Predicted 3D structure by AlphaFold2 with pLDDT = 83.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKQNGLPSFR  QRGLSSLNVP  RRYHLPLILL  RTLSLLPSLL  GAYHNTRSAY  NVPIRDSGGA60
LVLKSTQSDF  WIANFWCALA  GYWSWILTTS  MMRRWLYHYE  ISNAIVRVIT  LTVINGSISA120
FVSSQLERDQ  PIAIWMTICL  ILLVCNILKL  CFGTNPKYHR  KAEDVQSPRI  NLKSTAVKVL180
VLPLSVVTFL  TMFVALQQMD  RLQYQTSQLM  QQPFGLDHVV  SSGASTTSMV  ILILSSWSNQ240
AYERRKMLRQ  TSLKLLGQQN  VVYRFVLGQP  PSAHTQMTMG  PKIELESSSY  HDMLVVPAAD300
PDSYKSRKLY  EAMRWSKEMQ  YDYLVKTDDN  VFVRWDIVQD  ELMTLGKQKE  YWRGLVYRNM360
PPDAFGADKS  MNTDYPLPIL  PPYTSGVMYT  ISRDIVDLVV  GIETPQRFVA  ADDRNLGIWL420
FGYDISIIHD  SRIQDGDACE  ATQITKRFSD  TRLSDMTTMY  ENVVSGKAQC  IGLDTGICGV480
CYPCHDKRDD  WRAMNLACDE  FRGITMKKQP  LYDKVSGSKV  RDELQPSILG  ENDAWIIDGV540
LSQRTSVYSD  TDQWHLLYWV  CWTSDPSTFT  ERHWRALELV  WVHEPQAVIF  MITNTLPTDF600
FDEYRQYGYN  IHVVHFNKEN  LLSWNWYFGP  GTEDWLREWD  RWAEGKFFYW  HLTDYIRCLL660
LYNYGGTYMD  MDALWIRVPP  DSEMEFIGSD  YSSLISDREW  TLDDEGLYLP  QGLLRFKRGW720
KLFREMCEDA  FSAYAYDPEC  FNCHGPKAIT  TYVRQHRAAL  EMGGFTILPR  EVLYPASYLE780
INRFLLPNPL  AEHELRTKIM  VHSWNIHLFG  KMTNHLPIQE  GSIIDRVLQL  FDLDVPHTDI840
SSHAILSSSG  SRIVPMGLRG  PRSYIYRFMP  SFTALPSDAL  DMRRRALQQP  TPGRFQGLDR900
IYVRGGPPVV  EHVTITAEVA  FGSLTLDTNN  TITEHQQSLS  RSKAIELHNA  SQKDVNALLN960
DLSYSPSKLL  AANGGRDRLN  LSVKYSTGEH  DELLVDIIVV  EAEEDD1006

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT31(243-429)+GT32(611-676)

MKQNGLPSFR  QRGLSSLNVP  RRYHLPLILL  RTLSLLPSLL  GAYHNTRSAY  NVPIRDSGGA60
LVLKSTQSDF  WIANFWCALA  GYWSWILTTS  MMRRWLYHYE  ISNAIVRVIT  LTVINGSISA120
FVSSQLERDQ  PIAIWMTICL  ILLVCNILKL  CFGTNPKYHR  KAEDVQSPRI  NLKSTAVKVL180
VLPLSVVTFL  TMFVALQQMD  RLQYQTSQLM  QQPFGLDHVV  SSGASTTSMV  ILILSSWSNQ240
AYERRKMLRQ  TSLKLLGQQN  VVYRFVLGQP  PSAHTQMTMG  PKIELESSSY  HDMLVVPAAD300
PDSYKSRKLY  EAMRWSKEMQ  YDYLVKTDDN  VFVRWDIVQD  ELMTLGKQKE  YWRGLVYRNM360
PPDAFGADKS  MNTDYPLPIL  PPYTSGVMYT  ISRDIVDLVV  GIETPQRFVA  ADDRNLGIWL420
FGYDISIIHD  SRIQDGDACE  ATQITKRFSD  TRLSDMTTMY  ENVVSGKAQC  IGLDTGICGV480
CYPCHDKRDD  WRAMNLACDE  FRGITMKKQP  LYDKVSGSKV  RDELQPSILG  ENDAWIIDGV540
LSQRTSVYSD  TDQWHLLYWV  CWTSDPSTFT  ERHWRALELV  WVHEPQAVIF  MITNTLPTDF600
FDEYRQYGYN  IHVVHFNKEN  LLSWNWYFGP  GTEDWLREWD  RWAEGKFFYW  HLTDYIRCLL660
LYNYGGTYMD  MDALWIRVPP  DSEMEFIGSD  YSSLISDREW  TLDDEGLYLP  QGLLRFKRGW720
KLFREMCEDA  FSAYAYDPEC  FNCHGPKAIT  TYVRQHRAAL  EMGGFTILPR  EVLYPASYLE780
INRFLLPNPL  AEHELRTKIM  VHSWNIHLFG  KMTNHLPIQE  GSIIDRVLQL  FDLDVPHTDI840
SSHAILSSSG  SRIVPMGLRG  PRSYIYRFMP  SFTALPSDAL  DMRRRALQQP  TPGRFQGLDR900
IYVRGGPPVV  EHVTITAEVA  FGSLTLDTNN  TITEHQQSLS  RSKAIELHNA  SQKDVNALLN960
DLSYSPSKLL  AANGGRDRLN  LSVKYSTGEH  DELLVDIIVV  EAEEDD1006

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help