CAZyme3D

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Entry ID

Information for CAZyme ID: CDS13311.1

Basic Information

GenBank IDCDS13311.1
FamilyGT39
Sequence Length759
UniProt IDA0A077X0A9(100,100)Download
Average pLDDT?87.48
CAZy50 ID31737
CAZy50 RepYes, CDS13311.1
Structure ClusterSC_GT39_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688394
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusLichtheimia
SpeciesLichtheimia ramosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADPQLRKRR  GHEPYSENTI  PSPTLADEKK  KELHSLHASR  FGKWNKQHVI  ALATVTVLSI60
LTTFYKIWHP  AEVVFDEVHF  GKFAGFYLKR  TYFFDVHPPL  AKLMLAGMGW  LIGYDGHFDF120
ANIGDSYIEN  NVPYIGLRTL  PATLNVLCVV  LLYNIMRESG  YAVITCALTA  SMYLLDNSAV180
AQNRLIMLDS  MLVFYMLCTA  YCYIRFRKYR  YQEFTRPWWF  WLAATGFTMA  MTISVKMVGL240
FVVATIGVCV  LVDLWDLMDI  KRGLTMKHFM  KHFNARALCL  IVLPTAVYLF  WFYVHFAILN300
QSGPGDTFMS  SLFQETLKNS  AIKMKSLDIH  YYDVINIHHP  GTEVYLHSHE  LRYPLRYEDG360
RISSQGQQVT  GVKEADENCW  WRVKPTKDIP  EDGKRVAVRH  GDVIQLEHVA  TGTNLLAHDV420
ASPLLSTNEE  ITTVPQGTRY  NETLFQVILD  DHNNGNIWST  HMKSAKLLHM  DTKVAVWTRD480
KSLPDWALNQ  QDVNGNKNTQ  DRTNFWTAHD  IKGLNATEIN  MNKKKEIKTM  PFLRKFIELQ540
LRMFKHNAGL  TKPHPYQSTP  ISWPFMIRGI  SYWSKSDTRE  QIYMTGNIFG  WWLSVGAVAV600
YAGVALADTL  ARRRGIEPID  EPLRHRFFAS  GGFFLLLWLF  HYLPFFAMGR  SLFLHHYLPA660
ATCNYLLLGA  VFQFMFIDGI  DSPVSALEGT  TSTKYRQFQP  LAMLAHPATK  SYAVAAGIIA720
LQLCMFIFLS  PLTYGSPGLS  VGQVLQRKLL  GTWDLQFAK759

Predicted 3D structure by AlphaFold2 with pLDDT = 87.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MADPQLRKRR  GHEPYSENTI  PSPTLADEKK  KELHSLHASR  FGKWNKQHVI  ALATVTVLSI60
LTTFYKIWHP  AEVVFDEVHF  GKFAGFYLKR  TYFFDVHPPL  AKLMLAGMGW  LIGYDGHFDF120
ANIGDSYIEN  NVPYIGLRTL  PATLNVLCVV  LLYNIMRESG  YAVITCALTA  SMYLLDNSAV180
AQNRLIMLDS  MLVFYMLCTA  YCYIRFRKYR  YQEFTRPWWF  WLAATGFTMA  MTISVKMVGL240
FVVATIGVCV  LVDLWDLMDI  KRGLTMKHFM  KHFNARALCL  IVLPTAVYLF  WFYVHFAILN300
QSGPGDTFMS  SLFQETLKNS  AIKMKSLDIH  YYDVINIHHP  GTEVYLHSHE  LRYPLRYEDG360
RISSQGQQVT  GVKEADENCW  WRVKPTKDIP  EDGKRVAVRH  GDVIQLEHVA  TGTNLLAHDV420
ASPLLSTNEE  ITTVPQGTRY  NETLFQVILD  DHNNGNIWST  HMKSAKLLHM  DTKVAVWTRD480
KSLPDWALNQ  QDVNGNKNTQ  DRTNFWTAHD  IKGLNATEIN  MNKKKEIKTM  PFLRKFIELQ540
LRMFKHNAGL  TKPHPYQSTP  ISWPFMIRGI  SYWSKSDTRE  QIYMTGNIFG  WWLSVGAVAV600
YAGVALADTL  ARRRGIEPID  EPLRHRFFAS  GGFFLLLWLF  HYLPFFAMGR  SLFLHHYLPA660
ATCNYLLLGA  VFQFMFIDGI  DSPVSALEGT  TSTKYRQFQP  LAMLAHPATK  SYAVAAGIIA720
LQLCMFIFLS  PLTYGSPGLS  VGQVLQRKLL  GTWDLQFAK759

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT39(55-296)

MADPQLRKRR  GHEPYSENTI  PSPTLADEKK  KELHSLHASR  FGKWNKQHVI  ALATVTVLSI60
LTTFYKIWHP  AEVVFDEVHF  GKFAGFYLKR  TYFFDVHPPL  AKLMLAGMGW  LIGYDGHFDF120
ANIGDSYIEN  NVPYIGLRTL  PATLNVLCVV  LLYNIMRESG  YAVITCALTA  SMYLLDNSAV180
AQNRLIMLDS  MLVFYMLCTA  YCYIRFRKYR  YQEFTRPWWF  WLAATGFTMA  MTISVKMVGL240
FVVATIGVCV  LVDLWDLMDI  KRGLTMKHFM  KHFNARALCL  IVLPTAVYLF  WFYVHFAILN300
QSGPGDTFMS  SLFQETLKNS  AIKMKSLDIH  YYDVINIHHP  GTEVYLHSHE  LRYPLRYEDG360
RISSQGQQVT  GVKEADENCW  WRVKPTKDIP  EDGKRVAVRH  GDVIQLEHVA  TGTNLLAHDV420
ASPLLSTNEE  ITTVPQGTRY  NETLFQVILD  DHNNGNIWST  HMKSAKLLHM  DTKVAVWTRD480
KSLPDWALNQ  QDVNGNKNTQ  DRTNFWTAHD  IKGLNATEIN  MNKKKEIKTM  PFLRKFIELQ540
LRMFKHNAGL  TKPHPYQSTP  ISWPFMIRGI  SYWSKSDTRE  QIYMTGNIFG  WWLSVGAVAV600
YAGVALADTL  ARRRGIEPID  EPLRHRFFAS  GGFFLLLWLF  HYLPFFAMGR  SLFLHHYLPA660
ATCNYLLLGA  VFQFMFIDGI  DSPVSALEGT  TSTKYRQFQP  LAMLAHPATK  SYAVAAGIIA720
LQLCMFIFLS  PLTYGSPGLS  VGQVLQRKLL  GTWDLQFAK759

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help